2006 LFF Lyga
      Final tables of the Lithuanian Championship in 2006 are presented below. The Lithuanian Football Federation (LFF) organized three football leagues: A Lyga (the highest), 1 Lyga (second-tier), and 2 Lyga (third-tier), which comprised three regional zones.
A Lyga
Top scorers
1 Lyga
| Position | Club | Games played | Wins | Draws | Loses | Goals scored | Goals conceded | Points | 
| 1  | Kauno Jėgeriai |  34 | 23 | 7 | 4 | 75 | 28 | 76 | 
|  2 | Alytis Alytus | 34 | 22 | 7 | 5 | 69 | 23 | 73 | 
|  3  | Atlantas-2 Klaipėda | 34 | 19 | 8 | 7 | 70 | 35 | 65 | 
|  4 | Kruoja Pakruojis |  34 | 17 | 9 | 8 | 71 | 36 | 60 | 
|  5 | Rodiklis Kaunas | 34 | 17 | 7 | 10 | 70 | 44 | 58 | 
|  6  | Vėtra-2 Vilnius | 34 | 15 | 7 | 12 | 64 | 40 | 52 | 
|  7 | Interas Visaginas | 34 | 15 | 7 | 12 | 59 | 47 | 52 | 
|  8 | LKKA ir Teledema Kaunas | 34 | 15 | 7 | 12 | 50 | 53 | 52 | 
|  9  | Žalgiris-2 Vilnius |  34 | 13 | 7 | 14 | 42 | 42 | 46 | 
|  10 | FC Vilnius-2 |  34 | 10 | 12 | 12 | 51 | 51 | 42 | 
|  11  | Sūduva-2 Marijampolė |  34 | 12 | 5 | 17 | 44 | 65 | 41 | 
|  12 | Banga Gargždai |  34 |  9 | 12 | 13 | 44 | 49 | 39 | 
|  13  | KFK Šiauliai-2 |  34 | 11 | 6 | 17 | 51 | 69 | 39 | 
|  14 | Vilkmergė Ukmergė | 34 | 10 | 8 | 16 | 40 | 51 | 38 | 
|  15 | Lietava Jonava |  34 |  9 | 11 | 14 | 43 | 56 | 38 | 
|  16 | Atletas Kaunas |  34 |  8 | 10 | 16 | 39 | 47 | 34 | 
|  17 | Geležinis Vilkas Vilnius | 34 |  7 | 10 | 17 | 37 | 55 | 31 | 
|  18 | Babrungas Plungė |  34 |  3 | 2 | 29 | 24 | 152 | 11 | 
2 Lyga
2 Lyga zone South
| Position | Club | Games played | Wins | Draws | Loses | Goals scored | Goals conceded | Points | 
| 1 | FSK Anykšǒiai |  18 | 12 | 1 | 5 | 37 | 23 | 37 | 
| 2 | Vidzgiris Alytus | 18 | 11 | 2 | 5 | 47 | 19 | 35 | 
| 3 | Sveikata Kybartai |  18 | 11 | 2 | 5 | 37 | 24 | 35 | 
| 4 | Spyris Kaunas |  18 | 10 | 4 | 4 | 35 | 26 | 31 | 
| 5 | Utenis Utena | 18 |  7 | 4 | 7 | 29 | 30 | 25 | 
| 6 | FK Prienai | 18 |  6 | 3 | 9 | 38 | 41 | 21 | 
| 7 | Nevėžis-2 Kėdainiai |  18 |  6 | 3 | 9 | 28 | 35 | 21 | 
| 8 | SC-Savingė Kaišiadorys | 18 |  5 | 6 | 7 | 21 | 33 | 21 | 
| 9 | LVDK Kaunas |  17 |  4 | 2 | 11 | 28 | 35 | 14 | 
|  10 | FK Kalvarija | 17 |  3 | 1 | 13 | 12 | 46 | 10 | 
2 Lyga zone West
| Position | Club | Games played | Wins | Draws | Loses | Goals scored | Goals conceded | Points | 
| 1 | SM Šilutė-2 | 20 | 16 | 3 | 1 | 88 | 12 | 51 | 
|  2 | Sakuona Plikiai | 20 | 17 | 0 | 3 | 96 | 23 | 51 | 
|  3 | Tauras ir ERRA Tauragė |  20 | 13 | 3 | 4 | 71 | 28 | 42 | 
|  4 | Švyturys Klaipėda | 20 | 12 | 3 | 5 | 55 | 23 | 39 | 
|  5 | Glestum Klaipėda |  20 | 12 | 3 | 5 | 48 | 22 | 39 | 
|  6 | Minija Kretinga | 20 |  9 | 4 | 7 | 40 | 30 | 31 | 
|  7 | Bangele Gargždai |  20 |  8 | 1  | 11 | 40 | 42 | 25 | 
|  8 | Salantas Salantai | 20 |  5 | 1  | 14 | 23 | 66 | 16 | 
|  9 | Piritas Klaipėda |  20 |  4 | 2  | 14 | 25 | 48 | 14 | 
|  10 | FK Pagėgiai | 20 |  3 | 1  | 16 | 18 | 96 | 10 | 
|  11 | FK Skuodas |  20 |  0 | 1  | 19 | 11 | 125 |  1 | 
2 Lyga zone North
| Position | Club | Games played | Wins | Draws | Loses | Goals scored | Goals conceded | Points | 
| 1 | Ekranas-2 Panevėžys | 21 | 15 | 4 | 2 | 42 | 16 | 49 | 
|  2 | Kražantė Kelmė |  21 | 13 | 4 | 4 | 44 | 22 | 43 | 
|  3 | FK Mažeikiai |  21 | 11 | 5 | 5 | 57 | 26 | 38 | 
|  4 | Rinkuškiai Biržai | 21 |  8 | 3 | 10 | 27 | 28 | 27 | 
|  5 | Juventa-99 Šiauliai | 21 |  7 | 6 | 8 | 25 | 22 | 27 | 
|  6 | Venta Kuršėnai |  21 |  6 | 5 | 10 | 26 | 35 | 23 | 
|  7 | Mastis Telšiai |  21 |  5 | 3 | 13 | 22 | 39 | 18 | 
|  8 | SC Akmenė-Šiauliai-3 |  21 |  4 | 0 | 17 | 23 | 78 | 12 | 
References
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