3D-Jury

3D-Jury is a metaserver that aggregates and compares models from various protein structure prediction servers. It takes in groups of predictions made by a collection of servers and assigns each pair a 3D-Jury score, based on structural similarity. The score is generated by counting the number of Cα atoms in the two predictions within 3.5 Å of each other after being superpositioned. To improve accuracy of the final model, users can select the prediction servers from which to aggregate results.[1]

The Robetta automatic protein structure prediction server incorporates 3D-Jury into its prediction pipeline.[2]

References

  1. ↑ Ginalski K; et al. (2003). "3D-Jury: a simple approach to improve protein structure predictions". Bioinformatics 19 (8): 1015–1018. doi:10.1093/bioinformatics/btg124. PMID 12761065.
  2. ↑ Chivian D; et al. (2005). "Prediction of CASP6 structures using automated Robetta protocols". Proteins 61 (S7): 157–166. doi:10.1002/prot.20733. PMID 16187358.

External links


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