Christoph Steinbeck

Christoph Steinbeck

Christoph Steinbeck outside EMBL-EBI, at the Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.
Born 1966 (age 4950)[1]
Neuwied
Residence Germany
Nationality German
Fields
Institutions
Alma mater University of Bonn
Thesis LUCY, ein Programm zur Konstitutionsbestimmung aus Korrelations-NMR-Experimenten sowie Beispiele zur Identifizierung von Naturstoffen durch NMR-Spektroskopie (1995)
Doctoral students
Known for
Notable awards Blue Obelisk award[21]

Website

Christoph Steinbeck is a chemist born in Neuwied[22] in 1966, working at the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI).[23][24][25]

Education

Steinbeck received his PhD from the University of Bonn[1][26] in 1995 for work on LUCY, a software program for structural elucidation from nuclear magnetic resonance (NMR) correlation experiments.[27] In 2003 he received his habilitation.[1][28]

Research

Steinbeck's research interests[2][29][30][31] have involved the elucidation of chemical structures of metabolites. He has was one of the first chemists to develop open source tools for cheminformatics. He initiated JChemPaint[32] and was founder of the Chemistry Development Kit[33][34] and is responsible for leading the team working on Chemical Entities of Biological Interest (ChEBI).[35][36][37][38][39] Currently he heads the Cheminformatics and Metabolomics group at the European Bioinformatics Institute in the United Kingdom. Together with a few other chemists he was a founder member of the Blue Obelisk[40][41] movement in 2005.[42]

Steinbeck is editor-in-chief of the Journal of Cheminformatics, director of the Metabolomics Society,[43] past chair of the Computers-Information-Chemistry division of the German Chemical Society, past trustee of the Chemical Structure Association Trust,[44] and a lifetime member of the World Association of Theoretically Oriented Chemists.[45]

References

  1. 1 2 3 VIAF: 52749814
  2. 1 2 Christoph Steinbeck's publications indexed by Google Scholar, a service provided by Google
  3. Han, Yongquan (2003). Evolutionary Algorithm as an Approach for Computer Assisted Structure Elucidation of Organic and Bioorganic Compounds (PhD thesis). Friedrich-Schiller-Universität Jena.
  4. Han, Y; Steinbeck, C (2004). "Evolutionary-algorithm-based strategy for computer-assisted structure elucidation". Journal of Chemical Information and Modeling 44 (2): 489–98. doi:10.1021/ci034132y. PMID 15032528.
  5. Helmus, Tobias (2007). Encoding, Storing and Searching of Analytical Properties and Assigned Metabolite Structures (PhD thesis). Universität zu Köln.
  6. Spjuth, O; Helmus, T; Willighagen, E. L.; Kuhn, S; Eklund, M; Wagener, J; Murray-Rust, P; Steinbeck, C; Wikberg, J. E. (2007). "Bioclipse: An open source workbench for chemo- and bioinformatics". BMC Bioinformatics 8: 59. doi:10.1186/1471-2105-8-59. PMC 1808478. PMID 17316423.
  7. Kuhn, S; Helmus, T; Lancashire, R. J.; Murray-Rust, P; Rzepa, H. S.; Steinbeck, C; Willighagen, E. L. (2007). "Chemical Markup, XML, and the World Wide Web. 7. CMLSpect, an XML vocabulary for spectral data". Journal of Chemical Information and Modeling 47 (6): 2015–34. doi:10.1021/ci600531a. PMID 17887743.
  8. Kuhn, Thomas (2009). Open Source Workflow Engine for Cheminformatics: From Data Curation to Data Analysis (PhD thesis). Universität zu Köln.
  9. Kuhn, T; Willighagen, E. L.; Zielesny, A; Steinbeck, C (2010). "CDK-Taverna: An open workflow environment for cheminformatics". BMC Bioinformatics 11: 159. doi:10.1186/1471-2105-11-159. PMC 2862046. PMID 20346188.
  10. Moreno, Pablo (2012). Bioinformatic methods for species-specific metabolome inference (PhD thesis). University of Cambridge.
  11. Foster, J. M.; Moreno, P.; Fabregat, A.; Hermjakob, H.; Steinbeck, C.; Apweiler, R.; Wakelam, M. J. O.; Vizcaíno, J. A. (2013). Oresic, Matej, ed. "LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics". PLoS ONE 8 (5): e61951. doi:10.1371/journal.pone.0061951. PMC 3646891. PMID 23667450.
  12. Jayaseelan, K. V.; Moreno, P.; Truszkowski, A.; Ertl, P.; Steinbeck, C. (2012). "Natural product-likeness score revisited: An open-source, open-data implementation". BMC Bioinformatics 13: 106. doi:10.1186/1471-2105-13-106. PMC 3436723. PMID 22607271.
  13. May, John (2015). Cheminformatics for Genome Scale Reconstruction (PhD thesis). University of Cambridge.
  14. May, J. W.; James, A. G.; Steinbeck, C. (2013). "Metingear: a development environment for annotating genome-scale metabolic models". Bioinformatics 29 (17): 2213–2215. doi:10.1093/bioinformatics/btt342. PMC 3740624. PMID 23766418.
  15. May, J. W.; Steinbeck, C. (2014). "Efficient ring perception for the Chemistry Development Kit". Journal of Cheminformatics 6 (3). doi:10.1186/1758-2946-6-3. PMC 3922685. PMID 24479757.
  16. Beisken, Stephan (2015). Informatics for Tandem Mass Spectrometry-based Metabolomics (PDF) (PhD thesis). University of Cambridge.
  17. Beisken, S.; Meinl, T.; Wiswedel, B.; de Figueiredo, L.; Berthold, M.; Steinbeck, C. (2013). "KNIMECDK: Workflow-driven Cheminformatics". BMC Bioinformatics 14 (1): 257–260. doi:10.1186/1471-2105-14-257. PMC 3765822. PMID 24103053.
  18. Beisken, S.; Portwood, D.; Seymour, M.; Steinbeck, C. (2014). "MassCascade: Visual programming for LC-MS data processing in metabolomics". Molecular Informatics 33 (4): 307–310. doi:10.1002/minf.201400016.
  19. Beisken, S.; Earll, M.; Baxter, C.; Portwood, D.; Ament, Z.; Kende, A.; Hodgman, C.; Seymour, G.; Smith, R.; Fraser, P.; Seymour, M.; Steinbeck, C. (2014). "Metabolic differences in ripening of Solanum lycopersicum ‘Ailsa Craig’ and three monogenic mutants". Nature Scientific Data 1 (1): 140029. doi:10.1038/sdata.2014.29.
  20. Beisken, S.; Conesa, P.; Haug, K.; Reza, S.; Steinbeck, C. (2015). "SpeckTackle: JavaScript Charts for Spectroscopy". Journal of Cheminformatics 7 (17). doi:10.1186/s13321-015-0065-7.
  21. Murray-Rust, P. Blue Obelisk Award – Christoph Steinbeck of CDK. http://blogs.ch.cam.ac.uk/pmr/2006/09/14/blue-obelisk-award-christoph-steinbeck-of-cdk/
  22. www.metabolomicssociety.org/people/christoph-steinbeck
  23. Alcántara, R; Onwubiko, J; Cao, H; Matos, Pd; Cham, J. A.; Jacobsen, J; Holliday, G. L.; Fischer, J. D.; Rahman, S. A.; Jassal, B; Goujon, M; Rowland, F; Velankar, S; López, R; Overington, J. P.; Kleywegt, G. J.; Hermjakob, H; O'Donovan, C; Martín, M. J.; Thornton, J. M.; Steinbeck, C (2013). "The EBI enzyme portal". Nucleic Acids Research 41 (Database issue): D773–80. doi:10.1093/nar/gks1112. PMC 3531056. PMID 23175605.
  24. Orchard, S; Al-Lazikani, B; Bryant, S; Clark, D; Calder, E; Dix, I; Engkvist, O; Forster, M; Gaulton, A; Gilson, M; Glen, R; Grigorov, M; Hammond-Kosack, K; Harland, L; Hopkins, A; Larminie, C; Lynch, N; Mann, R. K.; Murray-Rust, P; Lo Piparo, E; Southan, C; Steinbeck, C; Wishart, D; Hermjakob, H; Overington, J; Thornton, J (2011). "Minimum information about a bioactive entity (MIABE)". Nature Reviews Drug Discovery 10 (9): 661–9. doi:10.1038/nrd3503. PMID 21878981.
  25. Christoph Steinbeck on Twitter
  26. Steinbeck, Christoph (1995). LUCY, ein Programm zur Konstitutionsbestimmung aus Korrelations-NMR-Experimenten sowie Beispiele zur Identifizierung von Naturstoffen durch NMR-Spektroskopie (PhD thesis). University of Bonn.
  27. Steinbeck, C. (1996). "LUCY—A Program for Structure Elucidation from NMR Correlation Experiments". Angewandte Chemie International Edition in English 35 (17): 1984–1986. doi:10.1002/anie.199619841.
  28. Steinbeck, Christoph (2003). Zur automatischen Strukturaufklärung organischer Verbindungen (Habiliation thesis). University of Bonn.
  29. List of publications from Microsoft Academic Search
  30. Christoph Steinbeck's publications indexed by the DBLP Bibliography Server at the University of Trier
  31. Christoph Steinbeck's publications indexed by the Scopus bibliographic database, a service provided by Elsevier.
  32. Krause, S.; Willighagen, E.; Steinbeck, C. (2000). "JChemPaint - Using the Collaborative Forces of the Internet to Develop a Free Editor for 2D Chemical Structures". Molecules 5: 93–98. doi:10.3390/50100093.
  33. Steinbeck, C.; Han, Y.; Kuhn, S.; Horlacher, O.; Luttmann, E.; Willighagen, E. (2003). "The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo- and Bioinformatics". Journal of Chemical Information and Modeling 43 (2): 493–500. doi:10.1021/ci025584y. PMID 12653513.
  34. Steinbeck, C.; Hoppe, C.; Kuhn, S.; Floris, M.; Guha, R.; Willighagen, E. (2006). "Recent Developments of the Chemistry Development Kit (CDK) - an Open-Source Java Library for Chemo- and Bioinformatics". Current Pharmaceutical Design 12 (17): 2111–2120. doi:10.2174/138161206777585274. PMID 16796559.
  35. Hastings, J.; De Matos, P.; Dekker, A.; Ennis, M.; Harsha, B.; Kale, N.; Muthukrishnan, V.; Owen, G.; Turner, S.; Williams, M.; Steinbeck, C. (2012). "The ChEBI reference database and ontology for biologically relevant chemistry: Enhancements for 2013". Nucleic Acids Research 41 (Database issue): D456–D463. doi:10.1093/nar/gks1146. PMC 3531142. PMID 23180789.
  36. Matos, P.; Adams, N.; Hastings, J.; Moreno, P.; Steinbeck, C. (2012). "A Database for Chemical Proteomics: ChEBI". Chemical Proteomics. Methods in Molecular Biology 803. pp. 273–296. doi:10.1007/978-1-61779-364-6_19. ISBN 978-1-61779-363-9. PMID 22065232.
  37. Vita, R.; Peters, B.; Josephs, Z.; De Matos, P.; Ennis, M.; Turner, S.; Steinbeck, C.; Seymour, E.; Zarebski, L.; Sette, A. (2011). "A Model for Collaborative Curation, the IEDB and ChEBI Curation of Non-peptidic Epitopes". Immunome research 7 (1): 1–8. PMID 21897450.
  38. Degtyarenko, K.; Hastings, J.; De Matos, P.; Ennis, M. (2009). "ChEBI: An Open Bioinformatics and Cheminformatics Resource". In Andreas D. Baxevanis. Current Protocols in Bioinformatics 14. pp. Unit Un14.9. doi:10.1002/0471250953.bi1409s26. ISBN 0471250953. PMID 19496059.
  39. Degtyarenko, K.; De Matos, P.; Ennis, M.; Hastings, J.; Zbinden, M.; McNaught, A.; Alcantara, R.; Darsow, M.; Guedj, M.; Ashburner, M. (2007). "ChEBI: A database and ontology for chemical entities of biological interest". Nucleic Acids Research 36 (Database issue): D344–D350. doi:10.1093/nar/gkm791. PMC 2238832. PMID 17932057.
  40. O'Boyle, N. M.; Guha, R.; Willighagen, E. L.; Adams, S. E.; Alvarsson, J.; Bradley, J. C.; Filippov, I. V.; Hanson, R. M.; Hanwell, M. D.; Hutchison, G. R.; James, C. A.; Jeliazkova, N.; Lang, A. S. D.; Langner, K. M.; Lonie, D. C.; Lowe, D. M.; Pansanel, J. R. M.; Pavlov, D.; Spjuth, O.; Steinbeck, C.; Tenderholt, A. L.; Theisen, K. J.; Murray-Rust, P. (2011). "Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on". Journal of Cheminformatics 3 (1): 37. doi:10.1186/1758-2946-3-37. PMC 3205042. PMID 21999342.
  41. Guha, R.; Howard, M. T.; Hutchison, G. R.; Murray-Rust, P.; Rzepa, H.; Steinbeck, C.; Wegner, J.; Willighagen, E. L. (2006). "The Blue Obelisk - Interoperability in Chemical Informatics". Journal of Chemical Information and Modeling 46 (3): 991–998. doi:10.1021/ci050400b. PMID 16711717.
  42. Guha, R.; Howard, M. T.; Hutchison, G. R.; Murray-Rust, P.; Rzepa, H.; Steinbeck, C.; Wegner, J.; Willighagen, E. L. (2006). "The Blue Obelisk - Interoperability in Chemical Informatics". Journal of Chemical Information and Modeling 46 (3): 991–998. doi:10.1021/ci050400b. PMID 16711717.
  43. Metabolomics Society Board, website of Metabolomics Society
  44. Chemical Structure Association Newsletter, 2006, 12, http://www.csa-trust.org/news06/Issue12.pdf
  45. http://www.watoc.net/watoc.members.html
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