OpenMP

OpenMP
Original author(s) OpenMP Architecture Review Board[1]
Developer(s) OpenMP Architecture Review Board[1]
Stable release 4.5 / November 15, 2015 (2015-11-15)
Operating system Cross-platform
Platform Cross-platform
Type Extension to C, C++, and Fortran; API
License Various[2]
Website openmp.org

OpenMP (Open Multi-Processing) is an application programming interface (API) that supports multi-platform shared memory multiprocessing programming in C, C++, and Fortran,[3] on most platforms, processor architectures and operating systems, including Solaris, AIX, HP-UX, Linux, OS X, and Windows. It consists of a set of compiler directives, library routines, and environment variables that influence run-time behavior.[2][4][5]

OpenMP is managed by the nonprofit technology consortium OpenMP Architecture Review Board (or OpenMP ARB), jointly defined by a group of major computer hardware and software vendors, including AMD, IBM, Intel, Cray, HP, Fujitsu, Nvidia, NEC, Red Hat, Texas Instruments, Oracle Corporation, and more.[1]

OpenMP uses a portable, scalable model that gives programmers a simple and flexible interface for developing parallel applications for platforms ranging from the standard desktop computer to the supercomputer.

An application built with the hybrid model of parallel programming can run on a computer cluster using both OpenMP and Message Passing Interface (MPI), or more transparently through the use of OpenMP extensions for non-shared memory systems.

Introduction

An illustration of multithreading where the master thread forks off a number of threads which execute blocks of code in parallel.

OpenMP is an implementation of multithreading, a method of parallelizing whereby a master thread (a series of instructions executed consecutively) forks a specified number of slave threads and the system divides a task among them. The threads then run concurrently, with the runtime environment allocating threads to different processors.

The section of code that is meant to run in parallel is marked accordingly, with a preprocessor directive that will cause the threads to form before the section is executed.[3] Each thread has an id attached to it which can be obtained using a function (called omp_get_thread_num()). The thread id is an integer, and the master thread has an id of 0. After the execution of the parallelized code, the threads join back into the master thread, which continues onward to the end of the program.

By default, each thread executes the parallelized section of code independently. Work-sharing constructs can be used to divide a task among the threads so that each thread executes its allocated part of the code. Both task parallelism and data parallelism can be achieved using OpenMP in this way.

The runtime environment allocates threads to processors depending on usage, machine load and other factors. The runtime environment can assign the number of threads based on environment variables, or the code can do so using functions. The OpenMP functions are included in a header file labelled omp.h in C/C++.

History

The OpenMP Architecture Review Board (ARB) published its first API specifications, OpenMP for Fortran 1.0, in October 1997. October the following year they released the C/C++ standard. 2000 saw version 2.0 of the Fortran specifications with version 2.0 of the C/C++ specifications being released in 2002. Version 2.5 is a combined C/C++/Fortran specification that was released in 2005.

Up to version 2.0, OpenMP primarily specified ways to parallelize highly regular loops, as they occur in matrix-oriented numerical programming, where the number of iterations of the loop is known at entry time. This was recognized as a limitation, and various task parallel extensions were added to implementations. In 2005, an effort to standardize task parallelism was formed, which published a proposal in 2007, taking inspiration from task parallelism features in Cilk, X10 and Chapel.[6]

Version 3.0 was released in May 2008. Included in the new features in 3.0 is the concept of tasks and the task construct,[7] significantly broadening the scope of OpenMP beyond the parallel loop constructs that made up most of OpenMP 2.0.[8]

Version 4.0 of the specification was released in July 2013.[9] It adds or improves the following features: support for accelerators; atomics; error handling; thread affinity; tasking extensions; user defined reduction; SIMD support; Fortran 2003 support.[10]

The core elements

Chart of OpenMP constructs.

The core elements of OpenMP are the constructs for thread creation, workload distribution (work sharing), data-environment management, thread synchronization, user-level runtime routines and environment variables.

In C/C++, OpenMP uses #pragmas. The OpenMP specific pragmas are listed below.

Thread creation

The pragma omp parallel is used to fork additional threads to carry out the work enclosed in the construct in parallel. The original thread will be denoted as master thread with thread ID 0.

Example (C program): Display "Hello, world." using multiple threads.

#include <stdio.h>

int main(void)
{
    #pragma omp parallel
    printf("Hello, world.\n");
    return 0;
}

Use flag -fopenmp to compile using GCC:

$ gcc -fopenmp hello.c -o hello

Output on a computer with two cores, and thus two threads:

Hello, world.
Hello, world.

However, the output may also be garbled because of the race condition caused from the two threads sharing the standard output.

Hello, wHello, woorld.
rld.

Work-sharing constructs

Used to specify how to assign independent work to one or all of the threads.

Example: initialize the value of a large array in parallel, using each thread to do part of the work

int main(int argc, char **argv)
{
    int a[100000];

    #pragma omp parallel for
    for (int i = 0; i < 100000; i++) {
        a[i] = 2 * i;
    }

    return 0;
}

The loop counter i is declared inside the parallel for loop in C99 style, which gives each thread a unique and private version of the variable.[11]

OpenMP clauses

Since OpenMP is a shared memory programming model, most variables in OpenMP code are visible to all threads by default. But sometimes private variables are necessary to avoid race conditions and there is a need to pass values between the sequential part and the parallel region (the code block executed in parallel), so data environment management is introduced as data sharing attribute clauses by appending them to the OpenMP directive. The different types of clauses are

Data sharing attribute clauses

Synchronization clauses

Scheduling clauses

  1. static: Here, all the threads are allocated iterations before they execute the loop iterations. The iterations are divided among threads equally by default. However, specifying an integer for the parameter chunk will allocate chunk number of contiguous iterations to a particular thread.
  2. dynamic: Here, some of the iterations are allocated to a smaller number of threads. Once a particular thread finishes its allocated iteration, it returns to get another one from the iterations that are left. The parameter chunk defines the number of contiguous iterations that are allocated to a thread at a time.
  3. guided: A large chunk of contiguous iterations are allocated to each thread dynamically (as above). The chunk size decreases exponentially with each successive allocation to a minimum size specified in the parameter chunk

IF control

Initialization

Data copying

Reduction

Others

User-level runtime routines

Used to modify/check the number of threads, detect if the execution context is in a parallel region, how many processors in current system, set/unset locks, timing functions, etc.

Environment variables

A method to alter the execution features of OpenMP applications. Used to control loop iterations scheduling, default number of threads, etc. For example, OMP_NUM_THREADS is used to specify number of threads for an application.

Sample programs

In this section, some sample programs are provided to illustrate the concepts explained above.

Hello World

A basic program that exercises the parallel, private and barrier directives, and the functions omp_get_thread_num and omp_get_num_threads (not to be confused).

C

This C program can be compiled using gcc-4.4 with the flag -fopenmp

#include <omp.h>
#include <stdio.h>
#include <stdlib.h>

int main (int argc, char *argv[]) {
  int th_id, nthreads;
  #pragma omp parallel private(th_id)
  {
    th_id = omp_get_thread_num();
    printf("Hello World from thread %d\n", th_id);
    #pragma omp barrier
    if ( th_id == 0 ) {
      nthreads = omp_get_num_threads();
      printf("There are %d threads\n",nthreads);
    }
  }
  return EXIT_SUCCESS;
}

C++

This C++ program can be compiled using GCC: g++ -Wall -Wextra -Werror -fopenmp test.cpp
NOTE: iostream is not thread-safe. Therefore, for instance, cout calls must be executed in critical areas or by only one thread (e.g. masterthread).

#include <iostream>
#include <omp.h>

int main()
{
  int th_id, nthreads;
  #pragma omp parallel private(th_id) shared(nthreads)
  {
    th_id = omp_get_thread_num();
    #pragma omp critical
    {
      std::cout << "Hello World from thread " << th_id << '\n';
    }
    #pragma omp barrier

    #pragma omp master
    {
      nthreads = omp_get_num_threads();
      std::cout << "There are " << nthreads << " threads" << '\n';
    }
  }

  return 0;
}

Fortran 77

Here is a Fortran 77 version.

      PROGRAM HELLO
      INTEGER ID, NTHRDS
      INTEGER OMP_GET_THREAD_NUM, OMP_GET_NUM_THREADS
C$OMP PARALLEL PRIVATE(ID)
      ID = OMP_GET_THREAD_NUM()
      PRINT *, 'HELLO WORLD FROM THREAD', ID
C$OMP BARRIER
      IF ( ID .EQ. 0 ) THEN
        NTHRDS = OMP_GET_NUM_THREADS()
        PRINT *, 'THERE ARE', NTHRDS, 'THREADS'
      END IF
C$OMP END PARALLEL
      END

Fortran 90 free-form

Here is a Fortran 90 free-form version.

 program hello90
 use omp_lib
 integer:: id, nthreads
   !$omp parallel private(id)
   id = omp_get_thread_num()
   write (*,*) 'Hello World from thread', id
   !$omp barrier
   if ( id == 0 ) then
     nthreads = omp_get_num_threads()
     write (*,*) 'There are', nthreads, 'threads'
   end if
   !$omp end parallel
 end program

Clauses in work-sharing constructs (in C/C++)

The application of some OpenMP clauses are illustrated in the simple examples in this section. The code sample below updates the elements of an array b by performing a simple operation on the elements of an array a. The parallelization is done by the OpenMP directive #pragma omp. The scheduling of tasks is dynamic. Notice how the iteration counters j and k have to be made private, whereas the primary iteration counter i is private by default. The task of running through i is divided among multiple threads, and each thread creates its own versions of j and k in its execution stack, thus doing the full task allocated to it and updating the allocated part of the array b at the same time as the other threads.

 #define CHUNKSIZE 1 /*defines the chunk size as 1 contiguous iteration*/
 /*forks off the threads*/
 #pragma omp parallel private(j,k)
 {
  /*Starts the work sharing construct*/
  #pragma omp for schedule(dynamic, CHUNKSIZE)
  for(i = 2; i <= N-1; i++)
     for(j = 2; j <= i; j++)
        for(k = 1; k <= M; k++)
           b[i][j] += a[i-1][j]/k + a[i+1][j]/k;
 }

The next code sample is a common usage of the reduction clause to calculate reduced sums. Here, we add up all the elements of an array a with an i-dependent weight using a for loop, which we parallelize using OpenMP directives and reduction clause. The scheduling is kept static.

 #define N 10000 /*size of a*/
 void calculate(long *); /*The function that calculates the elements of a*/
 int i;
 long w;
 long a[N];
 calculate(a);
 long sum = 0;
 /*forks off the threads and starts the work-sharing construct*/
 #pragma omp parallel for private(w) reduction(+:sum) schedule(static,1)
 for(i = 0; i < N; i++)
    {
      w = i*i;
      sum = sum + w*a[i];
    }
 printf("\n %li",sum);

An equivalent, less elegant, implementation of the above code is to create a local sum variable for each thread ("loc_sum"), and make a protected update of the global variable sum at the end of the process, through the directive critical. Note that this protection is critical, as explained elsewhere.

 ...
 long sum = 0, loc_sum;
 /*forks off the threads and starts the work-sharing construct*/
 #pragma omp parallel private(w,loc_sum)
 {
   loc_sum = 0;
   #pragma omp for schedule(static,1)
   for(i = 0; i < N; i++)
     {
       w = i*i;
       loc_sum = loc_sum + w*a[i];
     }
   #pragma omp critical
   sum = sum + loc_sum;
 }
 printf("\n %li",sum);

Implementations

OpenMP has been implemented in many commercial compilers. For instance, Visual C++ 2005, 2008, 2010, 2012 and 2013 support it (OpenMP 2.0, in Professional, Team System, Premium and Ultimate editions[12][13][14]), as well as Intel Parallel Studio for various processors.[15] Oracle Solaris Studio compilers and tools support the latest OpenMP specifications with productivity enhancements for Solaris OS (UltraSPARC and x86/x64) and Linux platforms. The Fortran, C and C++ compilers from The Portland Group also support OpenMP 2.5. GCC has also supported OpenMP since version 4.2.

Compilers with an implementation of OpenMP 3.0:

Several compilers support OpenMP 3.1:

Compilers supporting OpenMP 4.0:

Auto-parallelizing compilers that generates source code annotated with OpenMP directives:

Several profilers and debuggers expressly support OpenMP:

Pros and cons

Pros:

Cons:

Performance expectations

One might expect to get an N times speedup when running a program parallelized using OpenMP on a N processor platform. However, this seldom occurs for these reasons:

Thread affinity

Some vendors recommend setting the processor affinity on OpenMP threads to associate them with particular processor cores.[30][31][32] This minimizes thread migration and context-switching cost among cores. It also improves the data locality and reduces the cache-coherency traffic among the cores (or processors).

Benchmarks

There are some public domain OpenMP benchmarks for users to try.

Learning resources online

See also

References

  1. 1 2 3 "About the OpenMP ARB and". OpenMP.org. 2013-07-11. Retrieved 2013-08-14.
  2. 1 2 "OpenMP Compilers". OpenMP.org. 2013-04-10. Retrieved 2013-08-14.
  3. 1 2 Gagne, Abraham Silberschatz, Peter Baer Galvin, Greg. Operating system concepts (9th ed.). Hoboken, N.J.: Wiley. pp. 181–182. ISBN 978-1-118-06333-0.
  4. OpenMP Tutorial at Supercomputing 2008
  5. Using OpenMP – Portable Shared Memory Parallel Programming – Download Book Examples and Discuss
  6. Ayguade, Eduard; Copty, Nawal; Duran, Alejandro; Hoeflinger, Jay; Lin, Yuan; Massaioli, Federico; Su, Ernesto; Unnikrishnan, Priya; Zhang, Guansong (2007). A proposal for task parallelism in OpenMP (PDF). Proc. Int'l Workshop on OpenMP.
  7. "OpenMP Application Program Interface, Version 3.0" (PDF). openmp.org. May 2008. Retrieved 2014-02-06.
  8. LaGrone, James; Aribuki, Ayodunni; Addison, Cody; Chapman, Barbara (2011). A Runtime Implementation of OpenMP Tasks. Proc. Int'l Workshop on OpenMP. pp. 165–178. doi:10.1007/978-3-642-21487-5_13. CiteSeerX: 10.1.1.221.2775.
  9. "OpenMP 4.0 API Released". OpenMP.org. 2013-07-26. Retrieved 2013-08-14.
  10. "OpenMP Application Program Interface, Version 4.0" (PDF). openmp.org. July 2013. Retrieved 2014-02-06.
  11. http://supercomputingblog.com/openmp/tutorial-parallel-for-loops-with-openmp/
  12. Visual C++ Editions, Visual Studio 2005
  13. Visual C++ Editions, Visual Studio 2008
  14. Visual C++ Editions, Visual Studio 2010
  15. David Worthington, "Intel addresses development life cycle with Parallel Studio", SDTimes, 26 May 2009 (accessed 28 May 2009)
  16. "XL C/C++ for Linux Features", (accessed 9 June 2009)
  17. "Oracle Technology Network for Java Developers | Oracle Technology Network | Oracle". Developers.sun.com. Retrieved 2013-08-14.
  18. 1 2 "openmp – GCC Wiki". Gcc.gnu.org. 2013-07-30. Retrieved 2013-08-14.
  19. Submitted by Patrick Kennedy... on Fri, 09/02/2011 – 11:28 (2011-09-06). "Intel® C++ and Fortran Compilers now support the OpenMP* 3.1 Specification | Intel® Developer Zone". Software.intel.com. Retrieved 2013-08-14.
  20. "Clang 3.7 Release Notes". llvm.org. Retrieved 2015-10-10.
  21. "GCC 4.9 Release Series – Changes". www.gnu.org.
  22. "OpenMP* 4.0 Features in Intel Compiler 15.0". Software.intel.com.
  23. "Clang 3.7 Release Notes". llvm.org. Retrieved 2015-10-10.
  24. 1 2 Amritkar, Amit; Tafti, Danesh; Liu, Rui; Kufrin, Rick; Chapman, Barbara (2012). "OpenMP parallelism for fluid and fluid-particulate systems". Parallel Computing 38 (9): 501. doi:10.1016/j.parco.2012.05.005.
  25. Amritkar, Amit; Deb, Surya; Tafti, Danesh (2014). "Efficient parallel CFD-DEM simulations using OpenMP". Journal of Computational Physics 256: 501. Bibcode:2014JCoPh.256..501A. doi:10.1016/j.jcp.2013.09.007.
  26. Frequently Asked Questions on OpenMP
  27. Detecting and Avoiding OpenMP Race Conditions in C++
  28. Alexey Kolosov, Evgeniy Ryzhkov, Andrey Karpov 32 OpenMP traps for C++ developers
  29. Stephen Blair-Chappell, Intel Corporation, Becoming a Parallel Programming Expert in Nine Minutes, presentation on ACCU 2010 conference
  30. Chen, Yurong (2007-11-15). "Multi-Core Software". Intel Technology Journal (Intel) 11 (4). doi:10.1535/itj.1104.08.
  31. "OMPM2001 Result". SPEC. 2008-01-28.
  32. "OMPM2001 Result". SPEC. 2003-04-01.

Further reading

  • Quinn Michael J, Parallel Programming in C with MPI and OpenMP McGraw-Hill Inc. 2004. ISBN 0-07-058201-7
  • R. Chandra, R. Menon, L. Dagum, D. Kohr, D. Maydan, J. McDonald, Parallel Programming in OpenMP. Morgan Kaufmann, 2000. ISBN 1-55860-671-8
  • R. Eigenmann (Editor), M. Voss (Editor), OpenMP Shared Memory Parallel Programming: International Workshop on OpenMP Applications and Tools, WOMPAT 2001, West Lafayette, IN, USA, July 30–31, 2001. (Lecture Notes in Computer Science). Springer 2001. ISBN 3-540-42346-X
  • B. Chapman, G. Jost, R. van der Pas, D.J. Kuck (foreword), Using OpenMP: Portable Shared Memory Parallel Programming. The MIT Press (October 31, 2007). ISBN 0-262-53302-2
  • Parallel Processing via MPI & OpenMP, M. Firuziaan, O. Nommensen. Linux Enterprise, 10/2002
  • MSDN Magazine article on OpenMP
  • SC08 OpenMP Tutorial (PDF) – Hands-On Introduction to OpenMP, Mattson and Meadows, from SC08 (Austin)
  • OpenMP Specifications
  • Parallel Programming in Fortran 95 using OpenMP (PDF)

External links

This article is issued from Wikipedia - version of the Wednesday, February 10, 2016. The text is available under the Creative Commons Attribution/Share Alike but additional terms may apply for the media files.