Spinal Cord Toolbox
Developer(s) | NeuroPoly |
---|---|
Stable release | 2.1 / 1 December 2015 |
Written in | Python |
Operating system | Linux, Mac OS X |
Size | 140MB |
Available in | English |
Type | Scientific visualization and image computing |
License | MIT Licence |
Website |
sourceforge |
The Spinal Cord Toolbox (SCT) is a suite of analysis tools optimized for spinal cord images acquired with magnetic resonance imaging.[1] Main features include segmentation, registration and calculation of anatomical metrics.
Main Features
- Propseg Automatic spinal cord segmentation.[2]
- The MNI-Poly-AMU template is an anatomical template of the spinal cord with T2 weighting including segmentation of white matter, gray matter, CSF.[3] The template also include segmentation of spinal levels for automatic assessment of metrics at specific locations.[4]
- A White Matter atlas including 29 partial volume masks of which matter tracts.[5]
References
- ↑ Cohen-Adad J, De Leener B, Benhamou M, Cadotte D, Fleet D, Cadotte A, Fehlings MG, Pelletier Paquette JP, Thong W, Taso M, Collins DL, Callot V, Fonov V. Spinal Cord Toolbox: an open-source framework for processing spinal cord MRI data. Proceedings of the 20th Annual Meeting of OHBM, Hamburg, Germany 2014:3633
- ↑ De Leener B, Cohen-Adad J, Kadoury S. Automatic segmentation of the spinal cord and spinal canal coupled with vertebral labeling. Medical Imaging, IEEE Transactions on (in press). DOI: 10.1109/TMI.2015.2437192
- ↑ Fonov V, Le Troter A, Taso M, De Leener B, Leveque G, Benhamou M, Sdika M, Benali H, Pradat PF, Collins DL, Callot V, Cohen-Adad J. Framework for integrated MRI average of the spinal cord white and gray matter: The MNI-Poly-AMU template. Neuroimage 2014. DOI: 10.1016/j.neuroimage.2014.08.057
- ↑ Cadotte DW, Cadotte A, Cohen-Adad J, Fleet D, Livne M, Mikulis D, Fehlings MG. Resolving the anatomic variability of the human cervical spinal cord: a solution to facilitate advanced neural imaging. Proceedings of the 22th Annual Meeting of ISMRM, Milan, Italy 2014:1719.
- ↑ Benhamou M, Fonov V, Taso M, Le Troter A, Sdika M, Collins DL, Callot V, Cohen-Adad J. Atlas of white-matter tracts in the human spinal cord. Proceedings of the 22th Annual Meeting of ISMRM, Milan, Italy 2014:0013.
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