APOBEC3C

Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C
Available structures PDB Ortholog search: PDBe, RCSB List of PDB id codes 3VM8​, 3VOW​
Identifiers
Symbols	APOBEC3C ; A3C; APOBEC1L; ARDC2; ARDC4; ARP5; PBI; bK150C2.3
External IDs	OMIM: 607750 HomoloGene: 129856 GeneCards: APOBEC3C Gene
EC number	3.5.4.-
Gene ontology Molecular function • protein binding • zinc ion binding • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines • poly(A) RNA binding Cellular component • nucleus • cytoplasm Biological process • cytidine deamination • negative regulation of transposition • viral process • negative regulation of viral genome replication • innate immune response • defense response to virus • DNA demethylation Sources: Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	27350	n/a
Ensembl	ENSG00000244509	n/a
UniProt	Q9NRW3	n/a
RefSeq (mRNA)	NM_014508	n/a
RefSeq (protein)	NP_055323	n/a
Location (UCSC)	Chr 22: 39.01 – 39.02 Mb	n/a
PubMed search		n/a

Probable DNA dC->dU-editing enzyme APOBEC-3C is a protein that in humans is encoded by the APOBEC3C gene.^[1][2]

This gene is a member of the cytidine deaminase gene family. It is one of seven related genes or pseudogenes found in a cluster thought to result from gene duplication, on chromosome 22. Members of the cluster encode proteins that are structurally and functionally related to the C to U RNA-editing cytidine deaminase APOBEC1. It is thought that the proteins may be RNA editing enzymes and have roles in growth or cell cycle control.^[2]

References

1. Jarmuz A, Chester A, Bayliss J, Gisbourne J, Dunham I, Scott J, Navaratnam N (Feb 2002). "An anthropoid-specific locus of orphan C to U RNA-editing enzymes on chromosome 22". Genomics 79 (3): 285–96. doi:10.1006/geno.2002.6718. PMID 11863358.
2. "Entrez Gene: APOBEC3C apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C".

Further reading

• Wedekind JE, Dance GS, Sowden MP, Smith HC (2003). "Messenger RNA editing in mammals: new members of the APOBEC family seeking roles in the family business.". Trends Genet. 19 (4): 207–16. doi:10.1016/S0168-9525(03)00054-4. PMID 12683974.
• Cullen BR (2006). "Role and mechanism of action of the APOBEC3 family of antiretroviral resistance factors.". J. Virol. 80 (3): 1067–76. doi:10.1128/JVI.80.3.1067-1076.2006. PMC 1346961. PMID 16414984.
• Haché G, Mansky LM, Harris RS (2006). "Human APOBEC3 proteins, retrovirus restriction, and HIV drug resistance.". AIDS reviews 8 (3): 148–57. PMID 17078485.
• Madsen P, Anant S, Rasmussen HH; et al. (1999). "Psoriasis upregulated phorbolin-1 shares structural but not functional similarity to the mRNA-editing protein apobec-1.". J. Invest. Dermatol. 113 (2): 162–9. doi:10.1046/j.1523-1747.1999.00682.x. PMID 10469298.
• Dunham I, Shimizu N, Roe BA; et al. (1999). "The DNA sequence of human chromosome 22.". Nature 402 (6761): 489–95. doi:10.1038/990031. PMID 10591208.
• Strausberg RL, Feingold EA, Grouse LH; et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
• Mariani R, Chen D, Schröfelbauer B; et al. (2003). "Species-specific exclusion of APOBEC3G from HIV-1 virions by Vif.". Cell 114 (1): 21–31. doi:10.1016/S0092-8674(03)00515-4. PMID 12859895.
• Collins JE, Wright CL, Edwards CA; et al. (2005). "A genome annotation-driven approach to cloning the human ORFeome.". Genome Biol. 5 (10): R84. doi:10.1186/gb-2004-5-10-r84. PMC 545604. PMID 15461802.
• Yu Q, Chen D, König R; et al. (2005). "APOBEC3B and APOBEC3C are potent inhibitors of simian immunodeficiency virus replication.". J. Biol. Chem. 279 (51): 53379–86. doi:10.1074/jbc.M408802200. PMID 15466872.
• Gerhard DS, Wagner L, Feingold EA; et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
• Langlois MA, Beale RC, Conticello SG, Neuberger MS (2005). "Mutational comparison of the single-domained APOBEC3C and double-domained APOBEC3F/G anti-retroviral cytidine deaminases provides insight into their DNA target site specificities.". Nucleic Acids Res. 33 (6): 1913–23. doi:10.1093/nar/gki343. PMC 1074398. PMID 15809227.
• Pope SN, Lee IR (2005). "Yeast two-hybrid identification of prostatic proteins interacting with human sex hormone-binding globulin.". J. Steroid Biochem. Mol. Biol. 94 (1-3): 203–8. doi:10.1016/j.jsbmb.2005.01.007. PMID 15862967.
• Doehle BP, Schäfer A, Wiegand HL; et al. (2005). "Differential sensitivity of murine leukemia virus to APOBEC3-mediated inhibition is governed by virion exclusion.". J. Virol. 79 (13): 8201–7. doi:10.1128/JVI.79.13.8201-8207.2005. PMC 1143768. PMID 15956565.
• Rose KM, Marin M, Kozak SL, Kabat D (2005). "Regulated production and anti-HIV type 1 activities of cytidine deaminases APOBEC3B, 3F, and 3G.". AIDS Res. Hum. Retroviruses 21 (7): 611–9. doi:10.1089/aid.2005.21.611. PMID 16060832.
• Muckenfuss H, Hamdorf M, Held U; et al. (2006). "APOBEC3 proteins inhibit human LINE-1 retrotransposition.". J. Biol. Chem. 281 (31): 22161–72. doi:10.1074/jbc.M601716200. PMID 16735504.
• Ewing RM, Chu P, Elisma F; et al. (2007). "Large-scale mapping of human protein-protein interactions by mass spectrometry.". Mol. Syst. Biol. 3 (1): 89. doi:10.1038/msb4100134. PMC 1847948. PMID 17353931.
• Kinomoto M, Kanno T, Shimura M; et al. (2007). "All APOBEC3 family proteins differentially inhibit LINE-1 retrotransposition.". Nucleic Acids Res. 35 (9): 2955–64. doi:10.1093/nar/gkm181. PMC 1888823. PMID 17439959.