Cambridge Brain Analysis
Cambridge Brain Analysis (CamBA),[1] is a software repository developed at the Brain Mapping Unit, Department of Psychiatry, University of Cambridge, UK and contains software pipelines for functional magnetic resonance imaging (fMRI) analysis. It is designed for batch processing and its main graphical user interface offers a spreadsheet-like look-and-feel.
The software is available under the GNU General Public License and runs under Linux. Up-to-date information is available at the Neuroimaging Informatics Tools and Resources Clearinghous.[2]
History
The origins of the CamBA software repository begin in 1996 at the Institute of Psychiatry, King's College London, London, UK. Professor Edward Bullmore[3] and Professor Mick Brammer wrote a small package of software components to process functional magnetic resonance imaging data, which at that time was an emerging technology. In 1999 Dr John Suckling became involved in the first effort to coordinate and organise the software including options for processing structural MRI images and between-subject statistical inference, based on randomisation methods.
The CamBA initiative began in 2006. Instead of a library of functions, CamBA is better described as a software repository. It is an Eclipse RCP -based application and contains a number of pipelines which are constructed from software modules contributed by a variety of authors using a common ontology.
Pipelines
Currently pipelines are available for analysis of fMRI activation paradigms, spectral analysis of resting state acquisitions and second-level (between-subject) analysis based on randomisation (permutation) methods.
Current and past contributors
- Dr Sanja Abbott
- Dr Sophie Achard
- Mr John Aspden
- Dr Anna Barnes
- Prof Mick Brammer
- Prof Edward Thomas Bullmore
- Dr Jalal Fadili
- Dr Vincent Giampietro
- Dr Manfred Kitzbichler
- Dr Chris Long
- Dr Vochita Maxim
- Dr Cinly Ooi
- Dr Levent Sendur
- Dr John Suckling
- Dr Alle Meije Wink
See also
References
- ↑ CamBA, University of Cambridge, UK, retrieved 2013-02-16
- ↑ CamBA's project description page, Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC), retrieved 2013-02-16 External link in
|publisher=(help) - ↑ http://www.psychiatry.cam.ac.uk/pages/profiles/bullmore.html Professor Edward Thomas Bullmore
External links
- Brain Mapping Unit (BMU), University of Cambridge
- List of academic publications on CamBA
- Brain Mapping Unit / CamBA
- CamBA, a Linux package for statistical analysis, by University of Cambridge hosted at SourceForge
- Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC), CamBA resource page