| Name | Mark | System[nb 1] | From | To | Successor | Notes | 
|---|
| Atchison, Lincoln and Columbus Railroad |  | CB&Q | 1871 | 1871 | Atchison and Nebraska Railroad | 
| Atchison and Nebraska Railroad |  | CB&Q | 1871 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Atchison, Topeka and Santa Fe Railway | ATSF | ATSF | 1890 | 1996 | Burlington Northern and Santa Fe Railway | 
| Brandon Corporation | BRAN |  | 1978 | 2006 | Brandon Railroad | 
| Brownville, Fort Kearney and Pacific Railroad |  | CB&Q | 1867 | 1875 | Nebraska Railway | 
| Burlington and Missouri River Railroad in Nebraska |  | CB&Q | 1869 | 1880 | Chicago, Burlington and Quincy Railroad | 
| Burlington Northern Inc. | BN |  | 1970 | 1981 | Burlington Northern Railroad | 
| Burlington Northern Railroad | BN |  | 1981 | 1996 | Burlington Northern and Santa Fe Railway | 
| Burlington and Southwestern Railway |  | CB&Q | 1869 | 1870 | Atchison and Nebraska Railroad | 
| Chicago, Burlington and Quincy Railroad | CB&Q | CB&Q | 1880 | 1970 | Burlington Northern Inc. | 
| Chicago, Burlington and Quincy Railway |  | CB&Q | 1901 | 1907 | N/A | Leased the Chicago, Burlington and Quincy Railroad | 
| Chicago Great Western Railroad |  | CGW | 1909 | 1941 | Chicago Great Western Railway | 
| Chicago Great Western Railway | CGW | CGW | 1941 | 1968 | Chicago and North Western Railway | 
| Chicago Great Western Railway |  | CGW | 1903 | 1909 | Chicago Great Western Railroad | 
| Chicago, Iowa and Kansas Railroad |  | CB&Q | 1883 | 1884 | Chicago, Nebraska and Kansas Railroad | 
| Chicago, Kansas and Nebraska Railroad |  | RI | 1886 | 1886 | Chicago, Kansas and Nebraska Railway | 
| Chicago, Kansas and Nebraska Railway |  | RI | 1886 | 1891 | Chicago, Rock Island and Pacific Railway | 
| Chicago, Kansas and Western Railroad |  | ATSF | 1888 | 1890 | Atchison, Topeka and Santa Fe Railway | 
| Chicago, Milwaukee and St. Paul Railway |  | MILW | 1890 | 1928 | Chicago, Milwaukee, St. Paul and Pacific Railroad | 
| Chicago, Milwaukee, St. Paul and Pacific Railroad | MILW | MILW | 1928 | 1982 | N/A | 
| Chicago, Nebraska and Kansas Railroad |  | CB&Q | 1884 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Chicago and North Western Railway | CNW | CNW | 1901 | 1972 | Chicago and North Western Transportation Company | 
| Chicago and North Western Transportation Company | CNW | CNW | 1972 | 1995 | Union Pacific Railroad | 
| Chicago, Rock Island and Pacific Railroad | RI, ROCK |  | 1947 | 1980 | Union Pacific Railroad | 
| Chicago, Rock Island and Pacific Railway | RI | RI | 1888 | 1948 | Chicago, Rock Island and Pacific Railroad | 
| Chicago, St. Paul, Minneapolis and Omaha Railway | CMO | CNW | 1881 | 1972 | Chicago and North Western Transportation Company | 
| Covington, Columbus and Black Hills Railroad |  | CNW | 1875 | 1879 | Sioux City and Nebraska Railroad | 
| Fillmore Western Railway | FWRY |  | 1996 | 1999 | N/A | 
| Fremont, Elkhorn and Missouri Valley Railroad |  | CNW | 1869 | 1903 | Chicago and North Western Railway | 
| Grand Island, Hastings and Southeastern Railroad |  | UP | 1896 | 1897 | St. Joseph and Grand Island Railway | 
| Grand Island and Marysville Railroad |  | UP | 1885 | 1885 | St. Joseph and Grand Island Railroad | 
| Grand Island and Wyoming Central Railroad |  | CB&Q | 1886 | 1897 | Chicago, Burlington and Quincy Railroad | 
| Hastings and Grand Island Railroad |  | UP | 1879 | 1880 | St. Joseph and Western Railroad | 
| Hastings and Northwestern Railroad |  | UP | 1912 | 1917 | Union Pacific Railroad | 
| Illinois Central Railroad | IC | IC | 1899 | 1972 | Illinois Central Gulf Railroad | 
| Illinois Central Gulf Railroad | ICG |  | 1972 | 1985 | Chicago Central and Pacific Railroad | 
| Inter State Bridge and Street Railway Company |  | IC | 1890 | 1892 | Omaha Bridge and Terminal Railway Company | 
| Kansas City and Beatrice Railroad |  | MP | 1889 | 1894 | Kansas City Northwestern Railroad | 
| Kansas City Northwestern Railroad |  |  | 1917 | 1919 | Kansas City Northwestern Railway | 
| Kansas City Northwestern Railroad |  | MP | 1893 | 1910 | Missouri Pacific Railway | 
| Kansas City Northwestern Railway |  |  | 1925 | 1925 | N/A | 
| Kansas City and Omaha Railroad |  | CB&Q | 1886 | 1896 | Kansas City and Omaha Railway | 
| Kansas City and Omaha Railway |  | CB&Q | 1896 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Kansas City, Wyandotte and Northwestern Railroad |  | MP | 1889 | 1894 | Kansas City Northwestern Railroad | 
| Kansas and Nebraska Railway |  | UP | 1876 | 1877 | St. Joseph and Western Railroad | 
| Kearney and Black Hills Railway |  | UP | 1889 | 1898 | Union Pacific Railroad | 
| Lincoln and Black Hills Railroad |  | CB&Q | 1887 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Lincoln and North Western Railroad |  | CB&Q | 1879 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Midland Pacific Railway |  | CB&Q | 1868 | 1875 | Nebraska Railway | 
| Missouri Pacific Railroad | MP | MP | 1917 | 1997 | Union Pacific Railroad | 
| Missouri Pacific Railroad in Nebraska |  | MP | 1917 | 1956 | Missouri Pacific Railroad | 
| Missouri Pacific Railway |  | MP | 1882 | 1917 | Kansas City Northwestern Railroad, Missouri Pacific Railroad in Nebraska | 
| Missouri Pacific Railway of Nebraska |  | MP | 1881 | 1882 | Missouri Pacific Railway | 
| Missouri Valley and Blair Railway and Bridge Company |  | CNW | 1882 | 1920 | Chicago and North Western Railway | 
| Nebraska Railway |  | CB&Q | 1875 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Nebraska and Colorado Railroad |  | CB&Q | 1883 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Nebraska, Kansas and Colorado RailNet | NKCR |  | 1996 | 2005 | Nebraska Kansas Colorado Railway | 
| Nebraska Southern Railway |  | MP | 1886 | 1910 | Missouri Pacific Railway | 
| Nebraska and Western Railway |  | CB&Q | 1889 | 1891 | Sioux City, O'Neill and Western Railway | 
| Nebraska, Wyoming and Western Railroad |  | CB&Q | 1899 | 1908 | Chicago, Burlington and Quincy Railroad | 
| North-Eastern Nebraska Railroad |  | CNW | 1888 | 1888 | Chicago, St. Paul, Minneapolis and Omaha Railway | 
| Northern Nebraska Air Line Railroad |  | CNW | 1867 | 1868 | Sioux City and Pacific Railroad | 
| Omaha Belt Railway |  | MP | 1883 | 1910 | Missouri Pacific Railway | 
| Omaha Bridge and Terminal Railway Company |  | IC | 1892 | 1946 | Illinois Central Railroad | 
| Omaha, Niobrara and Black Hills Railroad |  | UP | 1879 | 1886 | Omaha and Republican Valley Railway | 
| Omaha and North Platte Railroad |  | CB&Q | 1886 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Omaha and Northern Nebraska Railway |  | CNW | 1878 | 1880 | Sioux City and Nebraska Railroad | 
| Omaha and Northwestern Railroad |  | CNW | 1869 | 1878 | Omaha and Northern Nebraska Railway | 
| Omaha and Republican Valley Railroad |  | UP | 1876 | 1886 | Omaha and Republican Valley Railway | 
| Omaha and Republican Valley Railway |  | UP | 1886 | 1898 | Union Pacific Railroad | 
| Omaha and South Western Railroad |  | CB&Q | 1869 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Omaha Southern Railway |  | MP | 1890 | 1910 | Missouri Pacific Railway | 
| Oxford and Kansas Railroad |  | CB&Q | 1887 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Pacific Railway in Nebraska |  | MP | 1887 | 1910 | Missouri Pacific Railway | 
| Randolph and Northeastern Nebraska Railroad |  | CNW | 1890 | 1890 | Chicago, St. Paul, Minneapolis and Omaha Railway | 
| Republican Valley Railroad |  | CB&Q | 1878 | 1888 | Chicago, Burlington and Quincy Railroad | 
| Republican Valley and Kansas Railroad |  | CB&Q | 1885 | 1886 | Republican Valley, Kansas and Southwestern Railroad | 
| Republican Valley, Kansas and Southwestern Railroad |  | CB&Q | 1886 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Republican Valley and Wyoming Railroad |  | CB&Q | 1887 | 1908 | Chicago, Burlington and Quincy Railroad | 
| Rock Island Omaha Terminal Railway |  | RI | 1914 | 1948 | Chicago, Rock Island and Pacific Railroad | 
| St. Joseph and Denver City Railroad |  | UP | 1866 | 1876 | Kansas and Nebraska Railway | 
| St. Joseph and Grand Island Railroad |  | UP | 1885 | 1897 | Grand Island, Hastings and Southeastern Railroad | 
| St. Joseph and Grand Island Railway | SJGI | UP | 1897 |  |  | 
| St. Joseph and Iowa Railroad |  | RI | 1886 | 1888 | Chicago, Rock Island and Pacific Railway | 
| St. Joseph and Western Railroad |  | UP | 1877 | 1885 | Grand Island and Marysville Railroad | 
| St. Paul and Sioux City Railroad |  | CNW | 1880 | 1881 | Chicago, St. Paul, Minneapolis and Omaha Railway | 
| Sioux City Bridge Company |  | CNW | 1889 | 1956 | Chicago and North Western Railway | 
| Sioux City and Nebraska Railroad |  | CNW | 1879 | 1883 | Chicago, St. Paul, Minneapolis and Omaha Railway, St. Paul and Sioux City Railroad | 
| Sioux City, O'Neill and Western Railway |  | CB&Q | 1891 | 1899 | Sioux City and Western Railway | 
| Sioux City and Pacific Railroad |  | CNW | 1868 | 1901 | Chicago and North Western Railway | 
| Sioux City and Western Railway |  | CB&Q | 1899 | 1908 | Chicago, Burlington and Quincy Railroad | 
| South Omaha Terminal Railway | SOT |  | 1927 | 1978 | Brandon Corporation | 
| South Omaha and Western Railroad |  | UP | 1905 | 1908 | Union Pacific Railroad | 
| Union Pacific Railroad |  | UP | 1862 | 1880 | Union Pacific Railway | 
| Union Pacific Railway |  | UP | 1880 | 1897 | Union Pacific Railroad | 
| Union Stock Yards Company of Omaha |  |  | 1883 | 1927 | South Omaha Terminal Railway |