GIS and aquatic science

ArcGIS Server website depicting submersed aquatic vegetation.

Geographic Information Systems (GIS) has become an integral part of aquatic science and limnology. Water by its very nature is dynamic. Features associated with water are thus ever-changing. To be able to keep up with these changes, technological advancements have given scientists methods to enhance all aspects of scientific investigation, from satellite tracking of wildlife to computer mapping of habitats. Agencies like the US Geological Survey, US Fish and Wildlife Service as well as other federal and state agencies are utilizing GIS to aid in their conservation efforts.

GIS is being used in multiple fields of aquatic science from limnology, hydrology, aquatic botany, stream ecology, oceanography and marine biology. Applications include using satellite imagery to identify, monitor and mitigate habitat loss. Imagery can also show the condition of inaccessible areas. Scientists can track movements and develop a strategy to locate locations of concern. GIS can be used to track invasive species, endangered species, and population changes.

One of the advantages of the system is the availability for the information to be shared and updated at any time through the use of web-based data collection.

GIS and fish

USGS sidescan radar image over base image from Army Corps of Engineers, indicating sturgeon location and river mile.

In the past, GIS was not a practical source of analysis due to the difficulty in obtaining spatial data on habitats or organisms in underwater environments. With the advancement of radio telemetry, hydroacoustic telemetry and side-scan sonar biologists have been able to track fish species and create databases that can be incorporated into a GIS program to create a geographical representation. Using radio and hydroacoustic telemetry, biologists are able to locate fish and acquire relatable data for those sites, this data may include substrate samples, temperature, and conductivity. Side-scan sonar allows biologists to map out a river bottom to gain a representation of possible habitats that are used. These two sets of data can be overlaid to delineate the distribution of fish and their habitats for fish. This method has been used in the study of the pallid sturgeon.

Over a period of time large amounts of data are collected and can be used to track patterns of migration, spawning locations and preferred habitat. Before, this data would be mapped and overlaid manually. Now this data can be entered into a GIS program and be layered, organized and analyzed in a way that was not possible to do in the past. Layering within a GIS program allows for the scientist to look at multiple species at once to find possible watersheds that are shared by these species, or to specifically choose one species for further examination. The US Geological Survey (USGS) in, cooperation with other agencies, were able to use GIS in helping map out habitat areas and movement patterns of pallid sturgeon. At the Columbia Environmental Research Center their effort relies on a customized ArcPad and ArcGIS, both ESRI (Environmental Systems Research Institute) applications, to record sturgeon movements to streamline data collection. A relational database was developed to manage tabular data for each individual sturgeon, including initial capture and reproductive physiology. Movement maps can be created for individual sturgeon. These maps help track the movements of each sturgeon through space and time. This allowed these researchers to prioritize and schedule field personnel efforts to track, map, and recapture sturgeon.

GIS and macrophytes

Map created from GIS database depicting the movements of individual sturgeon.

Surveyed (left) and predicted (right) distributions of submersed aquatic vegetation distribution Upper Mississippi River in 1989. The survey data were from the land cover/land use geographic information created by the U.S. Geological Survey Upper Midwest Environmental Sciences Center on the basis of interpretation of aerial photography of 1989.

Macrophytes are an important part of healthy ecosystems. They provide habitat, refuge, and food for fish, wildlife, and other organisms. Though natural occurring species are of great interest so are the invasive species that occur alongside these in our environment. GIS is being used by agencies and their respective resource managers as a tool to model these important macrophyte species. Through the use of GIS resource managers can assess the distributions of this important aspect of aquatic environments through a spatial and temporal scale. The ability to track vegetation change through time and space to make predictions about vegetation change are some of the many possibilities of GIS. Accurate maps of the aquatic plant distribution within an aquatic ecosystem are an essential part resource management.

It is possible to predict the possible occurrences of aquatic vegetation. For example, the USGS has created a model for the American wild celery (Vallisneria americana) by developing a statistical model that calculates the probability of submersed aquatic vegetation. They established a web link to an Environmental Systems Research Institute (ESRI) ArcGIS Server website *Submersed Aquatic Vegetation Model to make their model predictions available online. These predictions for distribution of submerged aquatic vegetation can potentially have an effect on foraging birds by creating avoidance zones by humans. If it is known where these areas are, birds can be left alone to feed undisturbed. When there are years where the aquatic vegetation is predicted to be limited in these important wildlife habitats, managers can be alerted.

Invasive species have become a great conservation concern for resource managers. GIS allows managers to map out plant locations and abundances. These maps can then be used to determine the threat of these invasive plants and help the managers decide on management strategies. Surveys of these species can be conducted and then downloaded into a GIS system. Coupled with this, native species can be included to determine how these communities respond with each other. By using known data of preexisting invasive species GIS models could predict future outbreaks by comparing biological factors. The Connecticut Agricultural Experiment Station Invasive Aquatic Species Program (CAES IAPP) is using GIS to evaluate risk factors. GIS allows managers to georeference plant locations and abundance. This allows for managers to display invasive communities alongside native species for study and management.

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Aquatic ecosystems – general and freshwater components

General	Acoustic ecology Adaptation Agent-based models Algal bloom Anoxic waters Aquatic animals (Insects Mammals) Aquatic plants Aquatic science Benthos Biodiversity research Bioluminescence Biomass Biomonitoring Cascade effect Colored dissolved organic matter Camouflage & Mimicry Dead zone Ecohydrology Ecosystems Eutrophication Fisheries science Food chain Food web GIS and aquatic science Hydrobiology Hypoxia Isotope analysis Microbial ecology Microbial food web Microbial loop Nekton Neuston Particle Pelagic zone Photic zone Phytoplankton Plankton Pleuston Predation Productivity Ramsar Convention Respiration Schooling Sediment trap Siltation Spawning Substrate Thermal pollution Toxicology Trophic level Water column Zooplankton More...

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Ecoregions	Freshwater (List) Marine (List) The Everglades Maharashtra The North Pacific Subtropical Gyre The San Francisco Estuary

Aquatic ecosystems – marine components

Marine	Marine biology Marine chemistry Deep scattering layer Diel vertical migration Ecosystems large marine marine) f-ratio Iron fertilization Marine snow Ocean nourishment Oceanic physical-biological process Ocean turbidity Photophore Thorson's rule Upwelling Whale fall More...

Marine life forms	Bacteriophages Census Fish coastal coral reef deep sea demersal pelagic Deep sea communities Deep sea creature Deep-water coral Invertebrates Larvae Mammals Paradox of the plankton Reptiles Seabirds Seashore wildlife Vertebrates Wild fisheries

Marine habitats	Bay mud Black smokers Coastal biogeomorphology Cold seeps Coral reefs Davidson Seamount Estuaries Intertidal ecology Intertidal wetlands Kelp forests Hydrothermal vents Lagoons Mangroves Marine biomes Marine habitats Mudflats Rocky shores Salt marshes Salt pannes and pools Seagrass meadows Sponge reefs Tide pools

Issues	Ecological values of mangrove Fisheries and climate change HERMIONE Marine conservation Marine conservation activism Marine pollution Marine Protected Area

Fisheries science and wild fisheries

Fisheries science	Population dynamics of fisheries Shifting baseline Fish stock Fish mortality Condition index Stock assessment Fish measurement Standard weight in fish Fish counter Data storage tag Catch per unit effort Otolith microchemical analysis Biomass Fisheries acoustics Acoustic tag Coded wire tag GIS and aquatic science Pop-up satellite archival tag EcoSCOPE Age class structure Trophic level Trophic cascades Match/mismatch hypothesis Fisheries and climate change Marine biology Aquatic ecosystems Bioeconomics EconMult Ecopath FishBase Census of Marine Life OSTM Fisheries databases Institutes Fisheries scientists

Wild fisheries	Ocean fisheries Diversity of fish Coastal fish Coral reef fish Demersal fish Forage fish Pelagic fish Cod fisheries Crab fisheries Eel fisheries Krill fisheries Kelp fisheries Lobster fisheries Shrimp fishery Eel ladder Fish ladder Fish screen Migration Salmon run Sardine run Shoaling and schooling Marine habitats Marine snow Water column Upwelling Humboldt current Algal blooms Dead zones Fish kill

Fisheries management, sustainability and conservation

Management	Fisheries management Fisheries law Monitoring control and surveillance Vessel monitoring system Fishery Resources Monitoring System Catch reporting Fisheries observer Illegal, unreported and unregulated fishing Magnuson–Stevens Act Pulse fishing Fisheries organizations

Quotas	Catch share Individual fishing quota Minimum landing size Slot limit Bycatch Discards Incidental catch Cetacean bycatch Turtle excluder device Shrimp-Turtle case EU quotas EU MLS Exclusive economic zone

Sustainability	Sustainable fisheries Maximum sustainable yield List of harvested aquatic animals by weight Sustainable seafood Overfishing Environmental effects of fishing Fishing down the food web Destructive fishing practices Future of Marine Animal Populations The Sunken Billions The End of the Line

Conservation	Marine Protected Area Marine reserve Marine conservation Marine conservation activism Salmon conservation Grey nurse shark conservation Shark sanctuary

Organisations	The Black Fish Marine Stewardship Council Friend of the Sea SeaChoice Seafood Watch Ocean Conservancy Oceana Sea Around Us Project WorldFish Center Defying Ocean's End HERMIONE PROFISH International Seafood Sustainability Foundation Sea Shepherd Conservation Society Greenpeace

Related issues	CalCOFI Fish slaughter Marine pollution Mercury in fish Shark finning Threatened sharks Threatened rays

List of fishing topics by subject Index of fishing articles Fisheries glossary

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GIS and aquatic science

GIS and fish

GIS and macrophytes

See also

External links