List of sequenced animal genomes

This list of sequenced animal genomes contains animal species for which complete genome sequences have been assembled, annotated and published. Substantially complete draft genomes are included, but not partial genome sequences or organelle-only sequences.

This list is incomplete; you can help by expanding it.

Porifera

Ctenophora

Placozoa

Cnidaria

Deuterostomia

Hemichordates

Echinoderms

Urochordates

Cephalochordates

Cyclostomes

Cartilaginous fish

Bony fish

good for any report

Amphibians

Reptiles

Birds

Mammals

Protostomia

Insects

Crustaceans

Chelicerates

Myriapoda

Tardigrades

Molluscs

Platyhelminthes

Nematodes

Annelids

Brachiopoda

Rotifera

See also

References

  1. ↑ Mansi Srivastava; Oleg Simakov; Jarrod Chapman; Bryony Fahey; Marie E. A. Gauthier; Therese Mitros; Gemma S. Richards; Cecilia Conaco; Michael Dacre; Hellsten, Uffe; et al. (5 August 2010). "The Amphimedon queenslandica genome and the evolution of animal complexity". Nature 466 (7306): 720–726. Bibcode:2010Natur.466..720S. doi:10.1038/nature09201. PMC: 3130542. PMID 20686567.
  2. ↑ National Human Genome Research Institute (2012). "NHGRI Mnemiopsis Genome Project". Retrieved 2013-02-05.
  3. ↑ Ryan JF.; et al. (2013). "The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution". Science 342 (6164): 1242592. doi:10.1126/science.1242592. PMC: 3920664. PMID 24337300.
  4. ↑ Moroz L.; et al. (2014). "The ctenophore genome and the evolutionary origins of neural systems". Nature 510: 109–114. doi:10.1038/nature13400. PMC: 4337882. PMID 24847885.
  5. ↑ Srivastava M, Begovic E, Chapman J, et al. (August 2008). "The Trichoplax genome and the nature of placozoans". Nature 454 (7207): 955–960. Bibcode:2008Natur.454..955S. doi:10.1038/nature07191. PMID 18719581.
  6. ↑ Chapman JA, Kirkness EF, Simakov O, et al. (March 25, 2010). "The dynamic genome of Hydra". Nature 464 (7288): 592–596. Bibcode:2010Natur.464..592C. doi:10.1038/nature08830. PMID 20228792.
  7. ↑ Putnam NH, Srivastava M, Hellsten U, et al. (July 2007). "Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization". Science 317 (5834): 86–94. Bibcode:2007Sci...317...86P. doi:10.1126/science.1139158. PMID 17615350.
  8. ↑ Sebastian Baumgarten, Oleg Simakov, Lisl Y. Esherick, Yi Jin Liew, Erik M. Lehnert, Craig T. Michell, Yong Li, Elizabeth A. Hambleton, Annika Guse, Matt E. Oates, Julian Gough, Virginia M. Weis, Manuel Aranda, John R. Pringle & Christian R. Voolstra (August 2015). "The genome of Aiptasia, a sea anemone model for coral symbiosis". Proceedings of the National Academy of Sciences of the United States of America 112: 11893–8. doi:10.1073/pnas.1513318112. PMID 26324906.
  9. ↑ Shinzato, Chuya; Shoguchi, Eiichi; Kawashima, Takeshi; Hamada, Mayuko; Hisata, Kanako; Tanaka, Makiko; Fujie, Manabu; Fujiwara, Mayuki; Koyanagi, Ryo; Ikuta, Tetsuro; Fujiyama, Asao; Miller, David J.; Satoh, Nori (24 July 2011). "Using the Acropora digitifera genome to understand coral responses to environmental change". Nature 476 (7360): 320–323. doi:10.1038/nature10249.
  10. 1 2 Simakov, Oleg; Kawashima, Takeshi; Marlétaz, Ferdinand; Jenkins, Jerry; Koyanagi, Ryo; Mitros, Therese; Hisata, Kanako; Bredeson, Jessen; Shoguchi, Eiichi (2015-11-18). "Hemichordate genomes and deuterostome origins". Nature. advance online publication: 459–465. doi:10.1038/nature16150. ISSN 1476-4687.
  11. ↑ Kenneth W. Baughman, Carmel McDougall, Scott F. Cummins, Mike Hall, Bernard M. Degnan, Nori Satoh & Eiichi Shoguchi (December 2014). "Genomic organization of Hox and ParaHox clusters in the echinoderm, Acanthaster planci". Genesis (New York, N.Y. : 2000) 52 (12): 952–958. doi:10.1002/dvg.22840. PMID 25394327.
  12. ↑ Sodergren E, Weinstock GM, Davidson EH, et al. (November 2006). "The Genome of the Sea Urchin Strongylocentrotus purpuratus". Science 314 (5801): 941–52. Bibcode:2006Sci...314..941S. doi:10.1126/science.1133609. PMC: 3159423. PMID 17095691.
  13. ↑ Dehal P, Satou Y, Campbell RK, et al. (December 2002). "The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins". Science 298 (5601): 2157–67. Bibcode:2002Sci...298.2157D. doi:10.1126/science.1080049. PMID 12481130.
  14. ↑ Small KS, Brudno M, Hill MM, Sidow A (2007). "A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome". Genome Biology 8 (3): R41. doi:10.1186/gb-2007-8-3-r41. PMC: 1868934. PMID 17374142.
  15. ↑ H. C. Seo, M. Kube, R. B. Edvardsen, M. F. Jensen, A. Beck, E. Spriet, G. Gorsky, E. M. Thompson, H. Lehrach, R. Reinhardt & D. Chourrout (December 2001). "Miniature genome in the marine chordate Oikopleura dioica". Science 294 (5551): 2506. doi:10.1126/science.294.5551.2506. PMID 11752568.
  16. ↑ Putnam NH, Butts T, Ferrier DE, et al. (June 2008). "The amphioxus genome and the evolution of the chordate karyotype". Nature 453 (7198): 1064–71. Bibcode:2008Natur.453.1064P. doi:10.1038/nature06967. PMID 18563158.
  17. ↑ "The sea lamprey Petromyzon marinus genome reveals the early origin of several chemosensory receptor families in the vertebrate lineage". BMC Evolutionary Biology 9: 180. 2009. doi:10.1186/1471-2148-9-180.
  18. ↑ Smith JJ; Kuraku S; Holt C; et al. (2013). "Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution". Nature Genetics 45 (4): 415–21, 421e1–2. doi:10.1038/ng.2568. PMC: 3709584. PMID 23435085.
  19. ↑ Venkatesh B, Kirkness EF, Loh YH, et al. (April 2007). "Survey Sequencing and Comparative Analysis of the Elephant Shark (Callorhinchus milii) Genome". PLOS Biology 5 (4): e101. doi:10.1371/journal.pbio.0050101. PMC: 1845163. PMID 17407382.
  20. ↑ Kasahara, M.; Naruse, K.; Sasaki, S.; Nakatani, Y.; Qu, W.; Ahsan, B.; Yamada, T.; Nagayasu, Y.; Doi, K.; Kasai, Y.; Jindo, T.; Kobayashi, D.; Shimada, A.; Toyoda, A.; Kuroki, Y.; Fujiyama, A.; Sasaki, T.; Shimizu, A.; Asakawa, S.; Shimizu, N.; Hashimoto, S. I.; Yang, J.; Lee, Y.; Matsushima, K.; Sugano, S.; Sakaizumi, M.; Narita, T.; Ohishi, K.; Haga, S.; Ohta, F. (2007). "The medaka draft genome and insights into vertebrate genome evolution". Nature 447 (7145): 714–719. doi:10.1038/nature05846. PMID 17554307.
  21. ↑ Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, Gerdol M, Aken B, Biscotti MA, Barucca M, Baurain D, Berlin AM, Blatch GL, Buonocore F, Burmester T, Campbell MS, Canapa A, Cannon JP, Christoffels A, De Moro G, Edkins AL, Fan L, Fausto AM, Feiner N, Forconi M, Gamieldien J, Gnerre S, Gnirke A, Goldstone JV, Haerty W, Hahn ME, Hesse U, Hoffmann S, Johnson J, Karchner SI, Kuraku S, Lara M, Levin JZ, Litman GW, Mauceli E, Miyake T, Mueller MG, Nelson DR, Nitsche A, Olmo E, Ota T, Pallavicini A, Panji S, Picone B, Ponting CP, Prohaska SJ, Przybylski D, Saha NR, Ravi V, Ribeiro FJ, Sauka-Spengler T, Scapigliati G, Searle SM, Sharpe T, Simakov O, Stadler PF, Stegeman JJ, Sumiyama K, Tabbaa D, Tafer H, Turner-Maier J, van Heusden P, White S, Williams L, Yandell M, Brinkmann H, Volff JN, Tabin CJ, Shubin N, Schartl M, Jaffe DB, Postlethwait JH, Venkatesh B, Di Palma F, Lander ES, Meyer A, Lindblad-Toh K (2013). "The African coelacanth genome provides insight into tetrapod evolution". Nature 496 (7445): 311–316. Bibcode:2013Natur.496..311A. doi:10.1038/nature12027. PMC: 3633110. PMID 23598338.
  22. ↑ Ensembl entry
  23. ↑ "Ensembl genome browser 59: Danio rerio - Description - Search Ensembl Zebrafish". Ensembl.org. Retrieved 2010-08-27.
  24. ↑ Schartl M; Walter RB; Shen Y (2013). "The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits". Nature Genetics 45 (5): 567–572. doi:10.1038/ng.2604. PMC: 3677569. PMID 23542700.
  25. ↑ Harel, I.; Benayoun, B. R. N. A.; Machado, B.; Singh, P. P.; Hu, C. K.; Pech, M. F.; Valenzano, D. R.; Zhang, E.; Sharp, S. C.; Artandi, S. E.; Brunet, A. (2015). "A Platform for Rapid Exploration of Aging and Diseases in a Naturally Short-Lived Vertebrate". Cell 160 (5): 1013–26. doi:10.1016/j.cell.2015.01.038. PMID 25684364.
  26. ↑ Reichwald K, Petzold A, Koch P, Downie BR, Hartmann N, et al. (2015). "Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish". Cell 163 (6): 1527–1538. doi:10.1016/j.cell.2015.10.071. PMID 26638077.
  27. ↑ Valenzano DR, Benayoun BA, Singh PP, et al. (2015). "The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan". Cell 163 (6): 1539–1554. doi:10.1016/j.cell.2015.11.008. PMID 26638078.
  28. ↑ Rondeau E, et al. (2014). "The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei". PLoS ONE. 9(7):e102089 (7): e102089. doi:10.1371/journal.pone.0102089. PMID 25069045.
  29. ↑ Ensembl Pre entry
  30. ↑ Jones FC, Grabherr MG, Chan YF, et al. (2012). "The genomic basis of adaptive evolution in threespine sticklebacks". Nature 484 (7392): 55–61. Bibcode:2012Natur.484...55.. doi:10.1038/nature10944. PMC: 3322419. PMID 22481358.
  31. ↑ Gallant, JR; et al. (2014). "Genomic basis for the convergent evolution of electric organs". Science 344 (6191): 1522–1525. doi:10.1126/science.1254432.
  32. ↑ "Spotted gar". Ensembl. Retrieved 11 September 2014.
  33. ↑ Berthelot, et al. (2014). "The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates". Nat Commun. 5:3657: 3657. doi:10.1038/ncomms4657. PMID 24755649.
  34. ↑ International Fugu Genome Consortium. Forth Genome Assembly
  35. ↑ International Fugu Genome Consortium
  36. ↑ Aparicio S, Chapman J, Stupka E, et al. (August 2002). "Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes". Science 297 (5585): 1301–10. Bibcode:2002Sci...297.1301A. doi:10.1126/science.1072104. PMID 12142439.
  37. ↑ Jaillon O, Aury JM, Brunet F, et al. (October 2004). "Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype". Nature 431 (7011): 946–57. Bibcode:2004Natur.431..946J. doi:10.1038/nature03025. PMID 15496914.
  38. ↑ Hellstein U, Harland RM, Gilchrist MJ, et al. (2010-04-30). "The genome of the Western clawed frog Xenopus tropicalis". Science 328 (5978): 633–636. Bibcode:2010Sci...328..633H. doi:10.1126/science.1183670. PMC: 2994648. PMID 20431018.
  39. ↑ Sun, Yan-Bo; Xiong, Zi-Jun; Xiang, Xue-Yan; Liu, Shi-Ping; Zhou, Wei-Wei; Tu, Xiao-Long; Zhong, Li; Wang, Lu; Wu, Dong-Dong; Zhang, Bao-Lin; Zhu, Chun-Ling; Yang, Min-Min; Chen, Hong-Man; Li, Fang; Zhou, Long; Feng, Shao-Hong; Huang, Chao; Zhang, Guo-Jie; Irwin, David; Hillis, David M.; Murphy, Robert W.; Yang, Huan-Ming; Che, Jing; Wang, Jun; Zhang, Ya-Ping (2015). "Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes". Proceedings of the National Academy of Sciences 112 (11): E1257–E1262. doi:10.1073/pnas.1501764112.
  40. 1 2 3 John A St John (January 2012). "Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes". Genome Biology 13 (1): 415. doi:10.1186/gb-2012-13-1-415. PMC: 3334581. PMID 22293439.
  41. ↑ Alföldi J, Di Palma F, Grabherr M, et al. (August 31, 2011). "The genome of the green anole lizard and a comparative analysis with birds and mammals". Nature 477 (7366): 587–591. Bibcode:2011Natur.477..587A. doi:10.1038/nature10390. PMC: 3184186. PMID 21881562.
  42. ↑ Castoe, Todd A.; A. P. Jason de Koning, Kathryn T. Hall, Daren C. Card, Drew R. Schield, Matthew K. Fujita, Robert P. Ruggiero, Jack F. Degner, Juan M. Daza, Wanjun Gu, Jacobo Reyes-Velasco, Kyle J. Shaney, Jill M. Castoe, Samuel E. Fox, Alex W. Poole, Daniel Polanco, Jason Dobry, Michael W. Vandewege, Qing Li, Ryan K. Schott, Aurélie Kapusta, Patrick Minx, Cédric Feschotte, Peter Uetz, David A. Ray, Federico G. Hoffmann, Robert Bogden, Eric N. Smith, Belinda S. W. Chang, Freek J. Vonk, Nicholas R. Casewell, Christiaan V. Henkel, Michael K. Richardson, Stephen P. Mackessy, Anne M. Bronikowsi, Mark Yandell, Wesley C. Warren, Stephen M. Secor, David D. Pollock (2013-12-02). "The Burmese python genome reveals the molecular basis for extreme adaptation in snakes". Proceedings of the National Academy of Sciences 110 (51): 201314475. doi:10.1073/pnas.1314475110. ISSN 0027-8424. Retrieved 2013-12-09.
  43. ↑ Vonk, Freek J.; Nicholas R. Casewell, Christiaan V. Henkel, Alysha M. Heimberg, Hans J. Jansen, Ryan J. R. McCleary, Harald M. E. Kerkkamp, Rutger A. Vos, Isabel Guerreiro, Juan J. Calvete, Wolfgang Wüster, Anthony E. Woods, Jessica M. Logan, Robert A. Harrison, Todd A. Castoe, A. P. Jason de Koning, David D. Pollock, Mark Yandell, Diego Calderon, Camila Renjifo, Rachel B. Currier, David Salgado, Davinia Pla, Libia Sanz, Asad S. Hyder, José M. C. Ribeiro, Jan W. Arntzen, Guido E. E. J. M. van den Thillart, Marten Boetzer, Walter Pirovano, Ron P. Dirks, Herman P. Spaink, Denis Duboule, Edwina McGlinn, R. Manjunatha Kini, Michael K. Richardson (2013-12-02). "The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system". Proceedings of the National Academy of Sciences 110 (51): 201314702. doi:10.1073/pnas.1314702110. ISSN 0027-8424. Retrieved 2013-12-09.
  44. ↑ Bo Song, Shifeng Cheng, Yanbo Sun, Xiao Zhong, Jieqiong Jin, Rui Guan, Robert W. Murphy, Jing Che, Yaping Zhang & Xin Liu (2015). "A genome draft of the legless anguid lizard, Ophisaurus gracilis". GigaScience 4: 17. doi:10.1186/s13742-015-0056-7. PMID 25859342.
  45. 1 2 Wang Z.; Pascual-Anaya J.; Zadissa A. (2013). "The draft genomes of the soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan". Nature Genetics 45 (6): 701–706. doi:10.1038/ng.2615. PMC: 4000948. PMID 23624526.
  46. ↑ H Bradley Shaffer (March 2013). "The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage". Genome Biology 14 (3): 28. doi:10.1186/gb-2013-14-3-r28. PMC: 4054807. PMID 23537068.
  47. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 Erich D. Jarvis, Siavash Mirarab, Andre J. Aberer, Bo Li, Peter Houde, Cai Li, Simon Y. W. Ho, Brant C. Faircloth, Benoit Nabholz, Jason T. Howard, Alexander Suh, Claudia C. Weber, Rute R. da Fonseca, Jianwen Li, Fang Zhang, Hui Li, Long Zhou, Nitish Narula, Liang Liu, Ganesh Ganapathy, Bastien Boussau, Md Shamsuzzoha Bayzid, Volodymyr Zavidovych, Sankar Subramanian, Toni Gabaldon, Salvador Capella-Gutierrez, Jaime Huerta-Cepas, Bhanu Rekepalli, Kasper Munch, Mikkel Schierup, Bent Lindow, Wesley C. Warren, David Ray, Richard E. Green, Michael W. Bruford, Xiangjiang Zhan, Andrew Dixon, Shengbin Li, Ning Li, Yinhua Huang, Elizabeth P. Derryberry, Mads Frost Bertelsen, Frederick H. Sheldon, Robb T. Brumfield, Claudio V. Mello, Peter V. Lovell, Morgan Wirthlin, Maria Paula Cruz Schneider, Francisco Prosdocimi, Jose Alfredo Samaniego, Amhed Missael Vargas Velazquez, Alonzo Alfaro-Nunez, Paula F. Campos, Bent Petersen, Thomas Sicheritz-Ponten, An Pas, Tom Bailey, Paul Scofield, Michael Bunce, David M. Lambert, Qi Zhou, Polina Perelman, Amy C. Driskell, Beth Shapiro, Zijun Xiong, Yongli Zeng, Shiping Liu, Zhenyu Li, Binghang Liu, Kui Wu, Jin Xiao, Xiong Yinqi, Qiuemei Zheng, Yong Zhang, Huanming Yang, Jian Wang, Linnea Smeds, Frank E. Rheindt, Michael Braun, Jon Fjeldsa, Ludovic Orlando, F. Keith Barker, Knud Andreas Jonsson, Warren Johnson, Klaus-Peter Koepfli, Stephen O'Brien, David Haussler, Oliver A. Ryder, Carsten Rahbek, Eske Willerslev, Gary R. Graves, Travis C. Glenn, John McCormack, Dave Burt, Hans Ellegren, Per Alstrom, Scott V. Edwards, Alexandros Stamatakis, David P. Mindell, Joel Cracraft, Edward L. Braun, Tandy Warnow, Wang Jun, M. Thomas P. Gilbert & Guojie Zhang (December 2014). "Whole-genome analyses resolve early branches in the tree of life of modern birds". Science 346 (6215): 1320–1331. doi:10.1126/science.1253451. PMID 25504713.
  48. ↑ Huang Y; Li, Yingrui; Burt, David W; Chen, Hualan; Zhang, Yong; Qian, Wubin; Kim, Heebal; Gan, Shangquan; Zhao, Yiqiang; Li, Jianwen; Yi, Kang; Feng, Huapeng; Zhu, Pengyang; Li, Bo; Liu, Qiuyue; Fairley, Suan; Magor, Katharine E; Du, Zhenlin; Hu, Xiaoxiang; Goodman, Laurie; Tafer, Hakim; Vignal, Alain; Lee, Taeheon; Kim, Kyu-Won; Sheng, Zheya; An, Yang; Searle, Steve; Herrero, Javier; Groenen, Martien A M; Crooijmans, Richard P M A (2013). "The duck genome and transcriptome provide insight into an avian influenza virus reservoir species". Nature Genetics 45 (7): 776–783. doi:10.1038/ng.2657. PMC: 4003391. PMID 23749191.
  49. 1 2 Zhan X; Pan, Shengkai; Wang, Junyi; Dixon, Andrew; He, Jing; Muller, Margit G; Ni, Peixiang; Hu, Li; Liu, Yuan; Hou, Haolong; Chen, Yuanping; Xia, Jinquan; Luo, Qiong; Xu, Pengwei; Chen, Ying; Liao, Shengguang; Cao, Changchang; Gao, Shukun; Wang, Zhaobao; Yue, Zhen; Li, Guoqing; Yin, Ye; Fox, Nick C; Wang, Jun; Bruford, Michael W (2013). "Peregrine and saker falcon genome sequences provide insights into evolution of a predatory lifestyle". Nature Genetics 45 (5): 563–566. doi:10.1038/ng.2588. PMID 23525076.
  50. ↑ International Chicken Genome Sequencing Consortium.; Hillier; Miller; Birney; Warren; Hardison; Ponting; Bork; Burt; Groenen; Delany; Dodgson; Fingerprint Map; Assembly:; Chinwalla; Cliften; Clifton; Delehaunty; Fronick; Fulton; Graves; Kremitzki; Layman; Magrini; McPherson; Miner; Minx; Nash; Nhan; Nelson (December 2004). "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution". Nature 432 (7018): 695–716. Bibcode:2004Natur.432..695C. doi:10.1038/nature03154. PMID 15592404.
  51. ↑ Dalloul RA, Long JA, Zimin AV, et al. (7 September 2010). Roberts RJ, ed. "Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo) genome assembly and analysis". PLOS Biology 8 (9): e10000475. doi:10.1371/journal.pbio.1000475. PMC: 2935454. PMID 20838655.
  52. ↑ Wang B, Wang B, Ekblom R, Bunikis I, Siitari H, Höglund J (6 March 2014). "Whole genome sequencing of the black grouse (Tetrao tetrix): Reference guided assembly suggests faster-Z and MHC evolution". BMC Genomics 15: e10000180. doi:10.1186/1471-2164-15-180.
  53. 1 2 Hans Ellegren H., Smeds L., Burri, R.; Smeds; Burri; Olason; Backström; Kawakami; Künstner; Mäkinen; Nadachowska-Brzyska; Qvarnström; Uebbing; Wolf (2012). "The genomic landscape of species divergence in Ficedula flycatchers". Nature 491 (7426): 756–760. Bibcode:2012Natur.491..756E. doi:10.1038/nature11584.
  54. ↑ Warren WC; Clayton, David F.; Ellegren, Hans; et al. (April 1, 2010). "The genome of a songbird". Nature 464 (7289): 757–762. Bibcode:2010Natur.464..757W. doi:10.1038/nature08819. PMC: 3187626. PMID 20360741.
  55. ↑ Warren WC, Hillier LW, Marshall Graves JA, et al. (May 2008). "Genome analysis of the platypus reveals unique signatures of evolution". Nature 453 (7192): 175–83. Bibcode:2008Natur.453..175W. doi:10.1038/nature06936. PMC: 2803040. PMID 18464734.
  56. ↑ Mikkelsen TS, Wakefield MJ, Aken B, et al. (May 2007). "Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences". Nature 447 (7141): 167–77. Bibcode:2007Natur.447..167M. doi:10.1038/nature05805. PMID 17495919.
  57. ↑ Ensembl entry
  58. ↑ Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, Belov K, Rens W, Waters PD, Pharo EA, Shaw G, Wong ES, Lefèvre CM, Nicholas KR, Kuroki Y, Wakefield MJ, Zenger KR, Wang C, Ferguson-Smith M, Nicholas FW, Hickford D, Yu H, Short KR, Siddle HV, Frankenberg SR, Chew KY, Menzies BR, Stringer JM, Suzuki S, Hore TA, Delbridge ML, Patel HR, Mohammadi A, Schneider NY, Hu Y, O'Hara W, Al Nadaf S, Wu C, Feng ZP, Cocks BG, Wang J, Flicek P, Searle SM, Fairley S, Beal K, Herrero J, Carone DM, Suzuki Y, Sugano S, Toyoda A, Sakaki Y, Kondo S, Nishida Y, Tatsumoto S, Mandiou I, Hsu A, McColl KA, Lansdell B, Weinstock G, Kuczek E, McGrath A, Wilson P, Men A, Hazar-Rethinam M, Hall A, Davis J, Wood D, Williams S, Sundaravadanam Y, Muzny DM, Jhangiani SN, Lewis LR, Morgan MB, Okwuonu GO, Ruiz SJ, Santibanez J, Nazareth L, Cree A, Fowler G, Kovar CL, Dinh HH, Joshi V, Jing C, Lara F, Thornton R, Chen L, Deng J, Liu Y, Shen JY, Song XZ, Edson J, Troon C, Thomas D, Stephens A, Yapa L, Levchenko T, Gibbs RA, Cooper DW, Speed TP, Fujiyama A, Graves JA, O'Neill RJ, Pask AJ, Forrest SM, Worley KC (29 August 2011). "Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development". Genome Biol. 12 (8): R81. doi:10.1186/gb-2011-12-8-r81. PMC: 3277949. PMID 21854559.
  59. ↑ Davey, M. (10 April 2013). "Australians crack the code of koala's genetic blueprint". The Age. Retrieved 25 June 2013.
  60. 1 2 "Mammalian Genome Project". MIT.
  61. 1 2 3 4 Parker J, Tsagkogeorga G, Cotton JA, Liu Y, Provero P, Stupka E, Rossiter S (2013). "Genome-wide signatures of convergent evolution in echolocating mammals". Nature 502 (7470): 228–231. doi:10.1038/nature12511.
  62. 1 2 Lindblad-Toh K, Garber M, Zuk O, et al. (12 October 2011). "A high-resolution map of human evolutionary constraint using 29 mammals". Nature 478 (7370): 476–482. Bibcode:2011Natur.478..476.. doi:10.1038/nature10530. PMC: 3207357. PMID 21993624.
  63. ↑ Ensembl entry
  64. ↑ Ensembl entry
  65. ↑ Gibbs RA, Rogers J, Katze MG, et al. (April 2007). "Evolutionary and biomedical insights from the rhesus macaque genome". Science 316 (5822): 222–34. Bibcode:2007Sci...316..222.. doi:10.1126/science.1139247. PMID 17431167.
  66. ↑ Locke, D. P.; Warren, Wesley C.; et al. (2011). "Comparative and demographic analysis of orang-utan genomes". Nature 469 (7331): 529–533. Bibcode:2011Natur.469..529L. doi:10.1038/nature09687. PMC: 3060778. PMID 21270892.
  67. ↑ Scally A, Dutheil JY, Hillier LW, et al. (March 8, 2012). "Insights into hominid evolution from the gorilla genome sequence". Nature 483 (7388): 169–175. Bibcode:2012Natur.483..169S. doi:10.1038/nature10842. PMC: 3303130. PMID 22398555.
  68. ↑ McPherson JD, Marra M, Hillier L, et al. (February 2001). "A physical map of the human genome". Nature 409 (6822): 934–41. doi:10.1038/35057157. PMID 11237014.
  69. ↑ Venter JC, Adams MD, Myers EW, et al. (February 2001). "The sequence of the human genome". Science 291 (5507): 1304–51. Bibcode:2001Sci...291.1304V. doi:10.1126/science.1058040. PMID 11181995.
  70. ↑ Gregory SG, Barlow KF, McLay KE, et al. (May 2006). "The DNA sequence and biological annotation of human chromosome 1". Nature 441 (7091): 315–21. Bibcode:2006Natur.441..315G. doi:10.1038/nature04727. PMID 16710414.
  71. ↑ Green, R. E.; Krause, J.; Briggs, A. W.; Maricic, T.; Stenzel, U.; Kircher, M.; Patterson, N.; Li, H.; Zhai, W. (2010). "A Draft Sequence of the Neandertal Genome". Science 328 (5979): 710–22. Bibcode:2010Sci...328..710G. doi:10.1126/science.1188021. PMID 20448178.
  72. ↑ Chimpanzee Sequencing and Analysis Consortium. (September 2005). "Initial sequence of the chimpanzee genome and comparison with the human genome". Nature 437 (7055): 69–87. Bibcode:2005Natur.437...69.. doi:10.1038/nature04072. PMID 16136131.
  73. ↑ Prufer K, Much K, Hellmann I, et al. "The bonobo genome compared with the chimpanzee and human genomes". Nature 486 (7404). Bibcode:2012Natur.486..527P. doi:10.1038/nature11128. PMC: 3498939. PMID 22722832.
  74. ↑ Ensembl entry
  75. ↑ Worley, Kim C; Warren, Wesley C; Rogers, Jeffrey; Locke, Devin; Muzny, Donna M; Mardis, Elaine R; Weinstock, George M; Tardif, Suzette D; Aagaard, Kjersti M; Archidiacono, Nicoletta; Rayan, Nirmala Arul; Batzer, Mark A; Beal, Kathryn; Brejova, Brona; Capozzi, Oronzo; Capuano, Saverio B; Casola, Claudio; Chandrabose, Mimi M; Cree, Andrew; Dao, Marvin Diep; de Jong, Pieter J; del Rosario, Ricardo Cruz-Herrera; Delehaunty, Kim D; Dinh, Huyen H; Eichler, Evan E; Fitzgerald, Stephen; Flicek, Paul; Fontenot, Catherine C; Fowler, R Gerald; Fronick, Catrina; Fulton, Lucinda A; Fulton, Robert S; Gabisi, Ramatu Ayiesha; Gerlach, Daniel; Graves, Tina A; Gunaratne, Preethi H; Hahn, Matthew W; Haig, David; Han, Yi; Harris, R Alan; Herrero, Javier; Hillier, LaDeana W; Hubley, Robert; Hughes, Jennifer F; Hume, Jennifer; Jhangiani, Shalini N; Jorde, Lynn B; Joshi, Vandita; Karakor, Emre; Konkel, Miriam K; Kosiol, Carolin; Kovar, Christie L; Kriventseva, Evgenia V; Lee, Sandra L; Lewis, Lora R; Liu, Yih-shin; Lopez, John; Lopez-Otin, Carlos; Lorente-Galdos, Belen; Mansfield, Keith G; Marques-Bonet, Tomas; Minx, Patrick; Misceo, Doriana; Moncrieff, J Scott; Morgan, Margaret B; Nazareth, Lynne V; Newsham, Irene; Nguyen, Ngoc Bich; Okwuonu, Geoffrey O; Prabhakar, Shyam; Perales, Lora; Pu, Ling-Ling; Puente, Xose S; Quesada, Victor; Ranck, Megan C; Raney, Brian J; Raveendran, Muthuswamy; Deiros, David Rio; Rocchi, Mariano; Rodriguez, David; Ross, Corinna; Ruffier, Magali; Ruiz, San Juana; Sajjadian, Saba; Santibanez, Jireh; Schrider, Daniel R; Searle, Steve; Skaletsky, Helen; Soibam, Benjamin; Smit, Arian F A; Tennakoon, Jayantha B; Tomaska, Lubomir; Ullmer, Brygg; Vejnar, Charles E; Ventura, Mario; Vilella, Albert J; Vinar, Tomas; Vogel, Jan-Hinnerk; Walker, Jerilyn A; Wang, Qing; Warner, Crystal M; Wildman, Derek E; Witherspoon, David J; Wright, Rita A; Wu, Yuanqing; Xiao, Weimin; Xing, Jinchuan; Zdobnov, Evgeny M; Zhu, Baoli; Gibbs, Richard A; Wilson, Richard K (2014). "The common marmoset genome provides insight into primate biology and evolution". Nature Genetics. (Online) (8): 850–857. doi:10.1038/ng.3042.
  76. ↑ Pontius JU, Mullikin JC, Smith DR, et al. (November 2007). "Initial sequence and comparative analysis of the cat genome". Genome Research 17 (11): 1675–89. doi:10.1101/gr.6380007. PMC: 2045150. PMID 17975172.
  77. 1 2 3 4 5 Cho Y, et al. (2013). "The tiger genome and comparative analysis with lion and snow leopard genomes". Nature Communications 4: 2433. doi:10.1038/ncomms3433. PMC: 3778509. PMID 24045858.
  78. ↑ Dobrynin, Pavel; Liu, Shiping; Tamazian, Gaik; Xiong, Zijun; Yurchenko, Andrey A.; Krasheninnikova, Ksenia; Kliver, Sergey; Schmidt-Küntzel, Anne; Koepfli, Klaus-Peter (2015-01-01). "Genomic legacy of the African cheetah, Acinonyx jubatus". Genome Biology 16: 277. doi:10.1186/s13059-015-0837-4. ISSN 1474-760X. PMC: 4676127. PMID 26653294.
  79. ↑ Lindblad-Toh K, Wade CM, Mikkelsen TS, et al. (December 2005). "Genome sequence, comparative analysis and haplotype structure of the domestic dog". Nature 438 (7069): 803–19. Bibcode:2005Natur.438..803L. doi:10.1038/nature04338. PMID 16341006.
  80. ↑ Li R, Fan W, Tian G, et al. (January 21, 2010). "The sequence and de novo assembly of the giant panda genome". Nature 463 (7279): 311–317. Bibcode:2010Natur.463..311L. doi:10.1038/nature08696. PMC: 3951497. PMID 20010809.
  81. 1 2 3 Hyung-Soon Nim; et al. (2014). "Minke whale genome and aquatic adaptation in cetaceans". Nature Genetics 46: 88–92. doi:10.1038/ng.2835.
  82. ↑ Akbar Dastjerdi, Christelle Robert & Mick Watson (2014). "Low coverage sequencing of two Asian elephant (Elephas maximus) genomes". GigaScience 3: 12. doi:10.1186/2047-217X-3-12. PMID 25053995.
  83. ↑ UCSC browser entry
  84. ↑ Wade CM; Giulotto, E.; Sigurdsson, S.; et al. (November 6, 2009). "Genome sequence, comparative analysis, and population genetics of the domestic horse". Science 326 (5954): 865–867. Bibcode:2009Sci...326..865W. doi:10.1126/science.1178158. PMID 19892987.
  85. ↑ Martien A. M. Groenen M. A. M., Archibald A. L., Uenishi H.; et al. (2012). "Analyses of pig genomes provide insight into porcine demography and evolution". Nature 491 (7424): 393–398. Bibcode:2012Natur.491..393G. doi:10.1038/nature11622. PMID 23151582.
  86. ↑ Qiang Qiu, Guojie Zhang, Tao Ma, Wubin Qian, Junyi Wang, Zhiqiang Ye, Changchang Cao, Quanjun Hu, Jaebum Kim, Denis M Larkin, Loretta Auvil, Boris Capitanu, Jian Ma, Harris A Lewin, Xiaoju Qian, Yongshan Lang, Ran Zhou; et al. (2012). "The yak genome and adaptation to life at high altitude.". Nature Genetics 44: 895–899. doi:10.1038/ng.2351.
  87. ↑ Canavez FC, Luche DD, Stothard P, et al. (2012). "Genome sequence and assembly of Bos indicus". Journal of Heredity 103 (3): 342–348. doi:10.1093/jhered/esr153.
  88. ↑ The Bovine Genome Sequencing and Analysis Consortium (2009). "The genome sequence of taurine cattle: a window to ruminant biology and evolution". Science 324 (5926): 522–528. Bibcode:2009Sci...324..522A. doi:10.1126/science.1169588. PMC: 2943200. PMID 19390049.
  89. ↑ Waterston RH, Lindblad-Toh K, Birney E, et al. (December 2002). "Initial sequencing and comparative analysis of the mouse genome". Nature 420 (6915): 520–62. Bibcode:2002Natur.420..520W. doi:10.1038/nature01262. PMID 12466850.
  90. ↑ Gibbs RA, Weinstock GM, Metzker ML, et al. (April 2004). "Genome sequence of the Brown Norway rat yields insights into mammalian evolution". Nature 428 (6982): 493–521. Bibcode:2004Natur.428..493G. doi:10.1038/nature02426. PMID 15057822.
  91. ↑ Ensembl entry
  92. ↑ Keeling CJ; Yuen MM; Liao NY; et al. (2013). "Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest". Genome Biology 14 (3): R27. doi:10.1186/gb-2013-14-3-r27. PMID 23537049.
  93. ↑ Tribolium Genome Sequencing Consortium; Gibbs; Weinstock; Brown; Denell; Beeman; Gibbs; Beeman; Brown; Bucher; Friedrich; Grimmelikhuijzen; Klingler; Lorenzen; Richards; Roth; Schröder; Tautz; Zdobnov; Muzny; Gibbs; Weinstock; Attaway; Bell; Buhay; Chandrabose; Chavez; Clerk-Blankenburg; Cree; Dao (April 2008). "The genome of the model beetle and pest Tribolium castaneum". Nature 452 (7190): 949–55. Bibcode:2008Natur.452..949R. doi:10.1038/nature06784. PMID 18362917.
  94. ↑ Nene V, Wortman JR, Lawson D, Haas B, et al. (June 2007). "Genome sequence of Aedes aegypti, a major arbovirus vector". Science 316 (5832): 1718–23. Bibcode:2007Sci...316.1718N. doi:10.1126/science.1138878. PMC: 2868357. PMID 17510324.
  95. ↑ Chen XG, et al. (October 2015). "Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution.". Proc Natl Acad Sci U S A. 112 (44): E5907–15. doi:10.1073/pnas.1516410112. PMC: 4640774. PMID 26483478.
  96. ↑ Holt RA, Subramanian GM, Halpern A, et al. (October 2002). "The genome sequence of the malaria mosquito Anopheles gambiae". Science 298 (5591): 129–49. Bibcode:2002Sci...298..129H. doi:10.1126/science.1076181. PMID 12364791.H
  97. 1 2 Lawniczak MK, Emrich SJ, Holloway AK, et al. (22 October 2010). "Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences". Science 300 (6003): 512–514. Bibcode:2010Sci...330..512L. doi:10.1126/science.1195755. PMC: 3674514. PMID 20966253.
  98. ↑ Zhou, Dan; Zhang, Donghui; Ding, Guohui; Shi, Linna; Hou, Qing; Ye, Yuting; Xu, Yang; Zhou, Huayun; Xiong, Chunrong; Li, Shengdi; Yu, Jing; Hong, Shanchao; Yu, Xinyou; Zou, Ping; Chen, Chen; Chang, Xuelian; Wang, Weijie; Lv, Yuan; Sun, Yan; Ma, Lei; Shen, Bo; Zhu, Changliang (2014). "Genome sequence of Anopheles sinensis provides insight into genetics basis of mosquito competence for malaria parasites". BMC Genomics 15 (1): 42. doi:10.1186/1471-2164-15-42. PMC: 3901762. PMID 24438588.
  99. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 Neafsey DE; et al. (January 2015). "Highly evolvable malaria vectors: The genomes of 16 Anopheles mosquitoes". Science 347 (6217): 1258522. doi:10.1126/science.1258522. PMC: 4380271. PMID 25554792.H
  100. 1 2 Jiménez-Guri, Eva; Huerta-Cepas, Jaime; Cozzuto, Luca; Wotton, Karl R; Kang, Hui; Himmelbauer, Heinz; Roma, Guglielmo; Gabaldón, Toni; Jaeger, Johannes (2013). "Comparative transcriptomics of early dipteran development". BMC Genomics 14: 123. doi:10.1186/1471-2164-14-123.
  101. ↑ Arensburger P, Megy K, Waterhouse RM, Abrudan J, et al. (October 2010). "Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics". Science 330 (6000): 86–88. Bibcode:2010Sci...330...86A. doi:10.1126/science.1191864. PMC: 3740384. PMID 20929810.
  102. ↑
  103. 1 2 3 4 5 6 7 8 9 10 Drosophila 12 Genomes Consortium; Eisen; Smith; Bergman; Oliver; Markow; Kaufman; Kellis; Gelbart; Iyer; Pollard; Sackton; Larracuente; Singh; Abad; Abt; Adryan; Aguade; Akashi; Anderson; Aquadro; Ardell; Arguello; Artieri; Barbash; Barker; Barsanti; Batterham; Batzoglou; Begun (2007). "Evolution of genes and genomes on the Drosophila phylogeny". Nature 450 (7167): 203–218. Bibcode:2007Natur.450..203C. doi:10.1038/nature06341. PMID 17994087.
  104. 1 2 3 4 5 6 7 8 http://www.hgsc.bcm.tmc.edu/project-species-i-Drosophila_modENCODE.hgsc
  105. ↑ Adams MD, Celniker SE, Holt RA, et al. (March 2000). "The genome sequence of Drosophila melanogaster". Science 287 (5461): 2185–95. Bibcode:2000Sci...287.2185.. doi:10.1126/science.287.5461.2185. PMID 10731132.
  106. ↑ "Transcriptional responses in a Drosophila defensive symbiosis". Mol. Ecol. 23: 1558–70. 2014. doi:10.1111/mec.12603. PMID 24274471.
  107. ↑ Richards S, Liu Y, Bettencourt BR, et al. (January 2005). "Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution". Genome Research 15 (1): 1–18. doi:10.1101/gr.3059305. PMC: 540289. PMID 15632085.
  108. ↑ http://genomics.princeton.edu/AndolfattoLab/Dsantomea_genome.html
  109. ↑ Lemke, Steffen; Antonopoulos, Dionysios A; Meyer, Folker; Domanus, Marc H; Schmidt-Ott, Urs (2011). "BMP signaling components in embryonic transcriptomes of the hover fly Episyrphus balteatus (Syrphidae)". BMC Genomics 12: 278. doi:10.1186/1471-2164-12-278.
  110. ↑ International Aphid Genomics Consortium (2010). Eisen, Jonathan A, ed. "Genome Sequence of the Pea Aphid Acyrthosiphon pisum". PLOS Biology 8 (2): e1000313. doi:10.1371/journal.pbio.1000313. PMC: 2826372. PMID 20186266.
  111. ↑ Nygaard S, Zhang G, Schiott M, et al. (2011). "The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming". Genome Research 21 (8): 1339–1348. doi:10.1101/gr.121392.111. PMC: 3149500. PMID 21719571.
  112. ↑ Honeybee Genome Sequencing Consortium; Weinstock; Robinson; Gibbs; Weinstock; Weinstock; Robinson; Worley; Evans; Maleszka; Robertson; Weaver; Beye; Bork; Elsik; Evans; Hartfelder; Hunt; Robertson; Robinson; Maleszka; Weinstock; Worley; Zdobnov; Hartfelder; Amdam; Bitondi; Collins; Cristino; Evans (October 2006). "Insights into social insects from the genome of the honeybee Apis mellifera". Nature 443 (7114): 931–49. Bibcode:2006Natur.443..931T. doi:10.1038/nature05260. PMC: 2048586. PMID 17073008.
  113. ↑ Suen G, Teiling C, Li L, et al. (2011). Copenhaver G, ed. "The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle". PLOS Genetics 7 (2): e1002007. doi:10.1371/journal.pgen.1002007. PMC: 3037820. PMID 21347285.
  114. 1 2 Bonasio R, Zhang G, Ye C, et al. (August 27, 2010). "Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator". Science 329 (5995): 1068–1071. Bibcode:2010Sci...329.1068B. doi:10.1126/science.1192428. PMID 20798317.
  115. ↑ Oxley PR; et al. (2014). "The genome of the clonal raider ant (Cerapachys biroi)". Current Biology 24: 451–458. doi:10.1016/j.cub.2014.01.018.
  116. ↑ Smith CD, Zimin A, Holt C, et al. (2011). "Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)". PNAS 108 (14): 5673–5678. Bibcode:2011PNAS..108.5673S. doi:10.1073/pnas.1008617108. PMC: 3078359. PMID 21282631.
  117. 1 2 3 Werren JH, Richards S, Desjardins CA, et al. (January 15, 2010). "Functional and evolutionary insights from the genomes of three parasitoid Nasonia species". Science 327 (5963): 343–348. Bibcode:2010Sci...327..343.. doi:10.1126/science.1178028. PMC: 2849982. PMID 20075255.
  118. ↑ Smith CR, Smith CD, Robertson HM, et al. (2011). "Draft genome of the red harvester ant Pogonomyrmex barbatus". PNAS 108 (14): 5667–5672. Bibcode:2011PNAS..108.5667S. doi:10.1073/pnas.1007901108. PMC: 3078412. PMID 21282651.
  119. ↑ Wurm Y, Wang J, Riba-Grognuz O, et al. (2011). "The genome of the fire ant Solenopsis invicta". PNAS 108 (14): 5679–5684. Bibcode:2011PNAS..108.5679W. doi:10.1073/pnas.1009690108. PMC: 3078418. PMID 21282665.
  120. ↑ Mita K, Kasahara M, Sasaki S, et al. (February 2004). "The genome sequence of silkworm, Bombyx mori". DNA Research 11 (1): 27–35. doi:10.1093/dnares/11.1.27. PMID 15141943.
  121. ↑ Zhan, S., Merlin, C., Boore, J.L (2011). "The monarch butterfly genome yields insights into long-distance migration". Cell 147 (5): 1171–1185. doi:10.1016/j.cell.2011.09.052. PMC: 3225893. PMID 22118469.
  122. ↑ You M.; Yue Z.; He W. (2013). "A heterozygous moth genome provides insights into herbivory and detoxification". Nature Genetics 45 (2): 220–225. doi:10.1038/ng.2524. PMID 23313953.
  123. ↑ Kirkness EF; et al. (June 2010). "Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle". PNAS 107 (27): 12168–12173. Bibcode:2010PNAS..10712168K. doi:10.1073/pnas.1003379107. PMC: 2901460. PMID 20566863.
  124. ↑ http://daphnia.cgb.indiana.edu/
  125. ↑ "Daphnia pulex v1.0". DOE Joint Genome Institute. Retrieved 2009-11-29.
  126. ↑ Colbourne JK, Pfrender ME, Gilbert D, et al. (4 February 2011). "The ecoresponsive genome of Daphnia pulex". Science 331 (6017): 555–561. Bibcode:2011Sci...331..555C. doi:10.1126/science.1197761. PMC: 3529199. PMID 21292972.
  127. ↑ Nathan J. Kenny, Yung Wa Sin, Xin Shen, Qu Zhe, Wei Wang, Ting Fung Chan, Stephen S. Tobe, Sebastian M. Shimeld, Ka Hou Chu & Jerome H. L. Hui (March 2014). "Genomic sequence and experimental tractability of a new decapod shrimp model, Neocaridina denticulata". Marine drugs 12 (3): 1419–1437. doi:10.3390/md120314191. PMID 24619275.
  128. ↑ NCBI accession entry
  129. ↑ Carlos W. Nossa, Paul Havlak, Jia-Xing Yue, Jie Lv, Kimberly Y. Vincent, H. Jane Brockmann & Nicholas H. Putnam (2014). "Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication". GigaScience 3: 9. doi:10.1186/2047-217X-3-9. PMID 24987520.
  130. ↑ Grbic M, Van Leeuwen T, Clark RM, Rombauts S, et al. (November 24, 2011). "The genome of Tetranychus urticae reveals herbivorous pest adaptations". Nature 479 (7374): 487–492. Bibcode:2011Natur.479..487G. doi:10.1038/nature10640. PMID 22113690.
  131. ↑ Zhijian Cao, Yao Yu, Yingliang Wu, Pei Hao, Zhiyong Di, Yawen He, Zongyun Chen, Weishan Yang, Zhiyong Shen, Xiaohua He, Jia Sheng, Xiaobo Xu, Bohu Pan, Jing Feng, Xiaojuan Yang, Wei Hong, Wenjuan Zhao, Zhongjie Li, Kai Huang, Tian Li, Yimeng Kong, Hui Liu, Dahe Jiang, Binyan Zhang, Jun Hu, Youtian Hu, Bin Wang, Jianliang Dai, Bifeng Yuan, Yuqi Feng, Wei Huang, Xiaojing Xing, Guoping Zhao, Xuan Li, Yixue Li & Wenxin Li (2013). "The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods". Nature communications 4: 2602. doi:10.1038/ncomms3602. PMID 24129506.
  132. 1 2 Kristian W. Sanggaard, Jesper S. Bechsgaard, Xiaodong Fang, Jinjie Duan, Thomas F. Dyrlund, Vikas Gupta, Xuanting Jiang, Ling Cheng, Dingding Fan, Yue Feng, Lijuan Han, Zhiyong Huang, Zongze Wu, Li Liao, Virginia Settepani, Ida B. Thogersen, Bram Vanthournout, Tobias Wang, Yabing Zhu, Peter Funch, Jan J. Enghild, Leif Schauser, Stig U. Andersen, Palle Villesen, Mikkel H. Schierup, Trine Bilde & Jun Wang (2014). "Spider genomes provide insight into composition and evolution of venom and silk". Nature communications 5: 3765. doi:10.1038/ncomms4765. PMID 24801114.
  133. ↑ Ariel D. Chipman, David E. K. Ferrier, Carlo Brena, Jiaxin Qu, Daniel S. T. Hughes, Reinhard Schroder, Montserrat Torres-Oliva, Nadia Znassi, Huaiyang Jiang, Francisca C. Almeida, Claudio R. Alonso, Zivkos Apostolou, Peshtewani Aqrawi, Wallace Arthur, Jennifer C. J. Barna, Kerstin P. Blankenburg, Daniela Brites, Salvador Capella-Gutierrez, Marcus Coyle, Peter K. Dearden, Louis Du Pasquier, Elizabeth J. Duncan, Dieter Ebert, Cornelius Eibner, Galina Erikson, Peter D. Evans, Cassandra G. Extavour, Liezl Francisco, Toni Gabaldon, William J. Gillis, Elizabeth A. Goodwin-Horn, Jack E. Green, Sam Griffiths-Jones, Cornelis J. P. Grimmelikhuijzen, Sai Gubbala, Roderic Guigo, Yi Han, Frank Hauser, Paul Havlak, Luke Hayden, Sophie Helbing, Michael Holder, Jerome H. L. Hui, Julia P. Hunn, Vera S. Hunnekuhl, LaRonda Jackson, Mehwish Javaid, Shalini N. Jhangiani, Francis M. Jiggins, Tamsin E. Jones, Tobias S. Kaiser, Divya Kalra, Nathan J. Kenny, Viktoriya Korchina, Christie L. Kovar, F. Bernhard Kraus, Francois Lapraz, Sandra L. Lee, Jie Lv, Christigale Mandapat, Gerard Manning, Marco Mariotti, Robert Mata, Tittu Mathew, Tobias Neumann, Irene Newsham, Dinh N. Ngo, Maria Ninova, Geoffrey Okwuonu, Fiona Ongeri, William J. Palmer, Shobha Patil, Pedro Patraquim, Christopher Pham, Ling-Ling Pu, Nicholas H. Putman, Catherine Rabouille, Olivia Mendivil Ramos, Adelaide C. Rhodes, Helen E. Robertson, Hugh M. Robertson, Matthew Ronshaugen, Julio Rozas, Nehad Saada, Alejandro Sanchez-Gracia, Steven E. Scherer, Andrew M. Schurko, Kenneth W. Siggens, DeNard Simmons, Anna Stief, Eckart Stolle, Maximilian J. Telford, Kristin Tessmar-Raible, Rebecca Thornton, Maurijn van der Zee, Arndt von Haeseler, James M. Williams, Judith H. Willis, Yuanqing Wu, Xiaoyan Zou, Daniel Lawson, Donna M. Muzny, Kim C. Worley, Richard A. Gibbs, Michael Akam & Stephen Richards (November 2014). "The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima". PLoS Biology 12 (11): e1002005. doi:10.1371/journal.pbio.1002005. PMID 25423365.
  134. ↑ Koutsovoulos, Georgios; Kumar, Sujai; Laetsch, Dominik R.; Stevens, Lewis; Daub, Jennifer; Conlon, Claire; Maroon, Habib; Thomas, Fran; Aboobaker, Aziz A.; Blaxter, Mark (2016). "No evidence for extensive horizontal gene transfer in the genome of the tardigradeHypsibius dujardini". Proceedings of the National Academy of Sciences: 201600338. doi:10.1073/pnas.1600338113. ISSN 0027-8424.
  135. ↑ Zhang G, Fang X, Guo X.; Fang; Guo; Li; Luo; Xu; Yang; Zhang; Wang; Qi; Xiong; Que; Xie; Holland; Paps; Zhu; Wu; Chen; Wang; Peng; Meng; Yang; Liu; Wen; Zhang; Huang; Zhu; Feng; Mount; Hedgecock (2012). "The oyster genome reveals stress adaptation and complexity of shell formation". Nature 490 (7418): 49–54. Bibcode:2012Natur.490...49Z. doi:10.1038/nature11413. PMID 22992520.
  136. 1 2 3 Simakov O; Marletaz F; Cho S-J; et al. (2013). "Insights into bilaterian evolution from three spiralian genomes". Nature 493 (7433): 526–531. Bibcode:2013Natur.493..526S. doi:10.1038/nature11696. PMC: 4085046. PMID 23254933.
  137. ↑ Albertin, Caroline B.; Simakov, Oleg; Mitros, Therese; Wang, Z. Yan; Pungor, Judit R.; Edsinger-Gonzales, Eric; Brenner, Sydney; Ragsdale, Clifton W.; Rokhsar, Daniel S. (2015). "The octopus genome and the evolution of cephalopod neural and morphological novelties". Nature 524 (7564): 220–224. doi:10.1038/nature14668. ISSN 0028-0836.
  138. ↑ Wang X.; Chen W.; Huang Y.; et al. (2011). "The draft genome of the carcinogenic human liver fluke Clonorchis sinensis". Genome Biology 12 (10): R107. doi:10.1186/gb-2011-12-10-r107.
  139. 1 2 3 4 Tsai IJ; Zarowiecki M; Holroyd N; et al. (2013). "The genomes of four tapeworm species reveal adaptations to parasitism". Nature 496 (7443): 57–63. Bibcode:2013Natur.496...57.. doi:10.1038/nature12031. PMC: 3964345. PMID 23485966.
  140. ↑ Zheng H; Zhang W; Zhang L; Zhang, Zhuangzhi; et al. (2013). "The genome of the hydatid tapeworm Echinococcus granulosus". Nature Genetics 45 (10): 1168–1175. doi:10.1038/ng.2757. PMID 24013640.
  141. ↑ Young ND, Jex AR, Li B, et al. (January 15, 2012). "Whole-genome sequence of Schistosoma haematobium". Nature Genetics 44 (2): 221–225. doi:10.1038/ng.1065. PMID 22246508.
  142. ↑ The Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium; Zheng; Chen; Zhang; Wang; Guo; Huang; Zhang; Huang; Jin; Dou; Hasegawa; Wang; Zhang; Zhou; Tao; Cao; Li; Vinar; Brejova; Brown; Li; Miller; Blair; Zhong; Chen; Liu; Hu; Wang; Zhang (2009). "The Schistosoma japonicum genome reveals features of host-parasite interplay". Nature 460 (7253): 345–351. Bibcode:2009Natur.460..345Z. doi:10.1038/nature08140. PMC: 3747554. PMID 19606140.
  143. ↑ Berriman M, Haas BJ, LoVerde PT, et al. (2009). "The genome of the blood fluke Schistosoma mansoni". Nature 460 (7253): 352–358. Bibcode:2009Natur.460..352B. doi:10.1038/nature08160. PMC: 2756445. PMID 19606141.
  144. ↑ Protasio AV; Tsai IJ; Babbage A; et al. (January 2012). "A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni". PLOS Neglected Tropical Diseases 6 (1): e1455. doi:10.1371/journal.pntd.0001455. PMC: 3254664. PMID 22253936.
  145. ↑ "Project".
  146. ↑ "SmedGD".
  147. ↑ Erich M Schwarz, Yan Hu, Igor Antoshechkin, Melanie M Miller, Paul W Sternberg, & Raffi V Aroian (April 2015). "The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families". Nature Genetics 47 (4): 416–422. doi:10.1038/ng.3237. PMID 25730766.
  148. ↑ Jex AR, Liu S, Li B, et al. (October 26, 2011). "Ascaris suum draft genome". Nature 479 (7374): 529–533. Bibcode:2011Natur.479..529J. doi:10.1038/nature10553. PMID 22031327.
  149. ↑ Ghedin E; Wang, S.; Spiro, D.; et al. (September 21, 2007). "Draft Genome of the Filarial Nematode Parasite Brugia malayi". Science 317 (5845): 1756–1760. Bibcode:2007Sci...317.1756G. doi:10.1126/science.1145406. PMC: 2613796. PMID 17885136.
  150. ↑ Kikuchi, Taisei; Cotton, James A.; Dalzell, Jonathan J.; Hasegawa, Koichi; Kanzaki, Natsumi; McVeigh, Paul; Takanashi, Takuma; Tsai, Isheng J.; Assefa, Samuel A.; Cock, Peter J. A.; Otto, Thomas Dan; Hunt, Martin; Reid, Adam J.; Sanchez-Flores, Alejandro; Tsuchihara, Kazuko; Yokoi, Toshiro; Larsson, Mattias C.; Miwa, Johji; Maule, Aaron G.; Sahashi, Norio; Jones, John T.; Berriman, Matthew; Tyler, Brett (1 September 2011). "Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus". PLoS Pathogens 7 (9): e1002219. doi:10.1371/journal.ppat.1002219.
  151. ↑ Mortazavi A, Schwarz EM, Williams B, et al. (December 2010). "Scaffolding a Caenorhabditis nematode genome with RNA-seq". Genome Research 20 (12): 1740–1747. doi:10.1101/gr.111021.110. PMC: 2990000. PMID 20980554.
  152. ↑ "GSC: Caenorhabditis n. sp. PB2801". Archived from the original on 18 August 2007. Retrieved 28 April 2007.
  153. ↑ "Wormbase". Retrieved 4 September 2015.
  154. ↑ Stein LD, Bao Z, Blasiar D, et al. (November 2003). "The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics". PLOS Biology 1 (2): e45. doi:10.1371/journal.pbio.0000045. PMC: 261899. PMID 14624247.
  155. ↑ C. elegans Sequencing Consortium. (December 1998). "Genome sequence of the nematode C. elegans: a platform for investigating biology". Science 282 (5396): 2012–8. doi:10.1126/science.282.5396.2012. PMID 9851916.
  156. ↑ "GSC: Caenorhabditis remanei". Archived from the original on 13 March 2007. Retrieved 28 April 2007.
  157. ↑ Haag E. S.; et al. (2008). "Caenorhabditis evolution: if they all look alike, you aren't looking hard enough" (PDF). Trends in Genetics 23: 3. doi:10.1016/j.tig.2007.01.002.
  158. ↑ Godel, C.; Kumar, S.; Koutsovoulos, G.; Ludin, P.; Nilsson, D.; Comandatore, F.; Wrobel, N.; Thompson, M.; Schmid, C. D.; Goto, S.; Bringaud, F.; Wolstenholme, A.; Bandi, C.; Epe, C.; Kaminsky, R.; Blaxter, M.; Maser, P. (13 August 2012). "The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets". The FASEB Journal 26 (11): 4650–4661. doi:10.1096/fj.12-205096.
  159. ↑ Cotton, James A; Lilley, Catherine J; Jones, Laura M; Kikuchi, Taisei; Reid, Adam J; Thorpe, Peter; Tsai, Isheng J; Beasley, Helen; Blok, Vivian; Cock, Peter J; Eves-van den Akker, Sebastian; Holroyd, Nancy; Hunt, Martin; Mantelin, Sophie; Naghra, Hardeep; Pain, Arnab; Palomares-Rius, Juan E; Zarowiecki, Magdalena; Berriman, Matthew; Jones, John T; Urwin, Peter E (2014). "The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode". Genome Biology 15 (3): R43. doi:10.1186/gb-2014-15-3-r43.
  160. ↑ Laing R, Kikuchi T, Martinelli A, Tsai IJ, Beech RN, Redman E, Holroyd N, Bartley DJ, Beasley H, Britton C, Curran D, Devaney E, Gilabert A, Hunt M, Jackson F, Johnston SL, Kryukov I, Li K, Morrison AA, Reid AJ, Sargison N, Saunders GI, Wasmuth JD, Wolstenholme A, Berriman M, Gilleard JS, Cotton JA (28 August 2013). "The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery". Genome Biology 14 (8): R88. doi:10.1186/gb-2013-14-8-r88. PMC: 4054779. PMID 23985316.
  161. ↑ Bai, Xiaodong; Adams, Byron J.; Ciche, Todd A.; Clifton, Sandra; Gaugler, Randy; Kim, Kwi-suk; Spieth, John; Sternberg, Paul W.; Wilson, Richard K.; Grewal, Parwinder S.; Carlow, Clotilde K. S. (18 July 2013). "A Lover and a Fighter: The Genome Sequence of an Entomopathogenic Nematode Heterorhabditis bacteriophora". PLoS ONE 8 (7): e69618. doi:10.1371/journal.pone.0069618.
  162. ↑ Desjardins, Christopher A; Cerqueira, Gustavo C; Goldberg, Jonathan M; Hotopp, Julie C Dunning; Haas, Brian J; Zucker, Jeremy; Ribeiro, José M C; Saif, Sakina; Levin, Joshua Z; Fan, Lin; Zeng, Qiandong; Russ, Carsten; Wortman, Jennifer R; Fink, Doran L; Birren, Bruce W; Nutman, Thomas B (24 March 2013). "Genomics of Loa loa, a Wolbachia-free filarial parasite of humans". Nature Genetics 45 (5): 495–500. doi:10.1038/ng.2585.
  163. ↑ Charles Opperman, David McK. Bird, Mark Burke, Jonathan Cohn, John Cromer, Steve Diener, Jim Gajan, Steve Graham, T. D. Houfek, Jennifer Schaff, Reenah Schaffer, Elizabeth Scholl, Eric Windham, Bryon R. Sosinski, Valerie M. Williamson, Qingli Liu, Varghese P. Thomas, Dan S. Rokhsar, Therese Mitros; Bird; Williamson; Rokhsar; Burke; Cohn; Cromer; Diener; Gajan; Graham; Houfek; Liu; Mitros; Schaff; Schaffer; Scholl; Sosinski; Thomas; Windham (2008). "Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism". PNAS 105 (39): 14802–14807. Bibcode:2008PNAS..10514802O. doi:10.1073/pnas.0805946105. PMC: 2547418. PMID 18809916.
  164. ↑ Pierre Abad; Jerome Gouzy; Jean-Marc Aury; Philippe Castagnone-Sereno; Etienne G.J. Danchin; Emeline Deleury; Laetitia Perfus-Barbeoch vol. 26; pp. 909-915.; et al. (August 2008). "Genome sequence of the metazoan plant-parasitic nematode: Meloidogyne incognita". Nature Biotechnology 26 (8): 909–915. doi:10.1038/nbt.1482. PMID 18660804.
  165. ↑ Yat T. Tang, Xin Gao, Bruce A. Rosa, Sahar Abubucker, Kymberlie Hallsworth-Pepin, John Martin, Rahul Tyagi, Esley Heizer, Xu Zhang, Veena Bhonagiri-Palsikar, Patrick Minx, Wesley C. Warren, Qi Wang, Bin Zhan, Peter J. Hotez, Paul W. Sternberg, Annette Dougall, Soraya Torres Gaze, Jason Mulvenna, Javier Sotillo, Shoba Ranganathan, Elida M. Rabelo, Richard W. Wilson, Philip L. Felgner, Jeffrey Bethony, John M. Hawdon, Robin B. Gasser, Alex Loukas, & Makedonka Mitreva (March 2014). "Genome of the human hookworm Necator americanus". Nature Genetics 46 (3): 261–269. doi:10.1038/ng.2875. PMC: 3978129. PMID 24441737.
  166. 1 2 "Filarial worms Database". Retrieved 5 June 2015.
  167. ↑ Christoph Dieterich, Sandra W Clifton, Lisa N Schuster, Asif Chinwalla, Kimberly Delehaunty, Iris Dinkelacker, Lucinda Fulton, Robert Fulton, Jennifer Godfrey, Pat Minx, Makedonka Mitreva, Waltraud Roeseler, Huiyu Tian, Hanh Witte, Shiaw-Pyng Yang, Richard K Wilson & Ralf J Sommer (September 2008). "The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism". Nature Genetics 40 (10): 1193–1198. doi:10.1038/ng.227. PMID 18806794.
  168. ↑ Schiffer, Philipp H; Kroiher, Michael; Kraus, Christopher; Koutsovoulos, Georgios D; Kumar, Sujai; R Camps, Julia I; Nsah, Ndifon A; Stappert, Dominik; Morris, Krystalynne; Heger, Peter; Altmüller, Janine; Frommolt, Peter; Nürnberg, Peter; Thomas, W; Blaxter, Mark L; Schierenberg, Einhard (2013). "The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda". BMC Genomics 14 (1): 923. doi:10.1186/1471-2164-14-923.
  169. ↑ Aaron R. Jex, Peter Nejsum, Erich M. Schwarz, Li Hu, Neil D. Young, Ross S. Hall, Pasi K. Korhonen, Shengguang Liao, Stig Thamsborg, Jinquan Xia, Pengwei Xu, Shaowei Wang, Jean-Pierre Y. Scheerlinck, Andreas Hofmann, Paul W. Sternberg, Jun Wang, & Robin B. Gasser (July 2014). "Genome and transcriptome of the porcine whipworm Trichuris suis". Nature Genetics 46 (7): 701–706. doi:10.1038/ng.3012. PMC: 4105696. PMID 24929829.
  170. 1 2 Bernardo J. Foth, Isheng J. Tsai, Adam J. Reid, Allison J. Bancroft, Sarah Nichol, Alan Tracey, Nancy Holroyd, James A. Cotton, Eleanor J. Stanley, Magdalena Zarowiecki, Jimmy Z. Liu, Thomas Huckvale, Philip J. Cooper, Richard K. Grencis & Matthew Berriman (July 2014). "Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction". Nature Genetics 46 (7): 693–700. doi:10.1038/ng.3010. PMID 24929830.
  171. ↑ "JGI: Capitella teleta".
  172. ↑ "JGI: Helobdella robusta".
  173. ↑ "WhitneyLab: Eisenia fetida".
  174. ↑ Zwarycz AS, Nossa CW, Putnam NH, Ryan JF (2016). "Timing and Scope of Genomic Expansion within Annelida: Evidence from Homeoboxes in the Genome of the Earthworm Eisenia fetida.". Genome Biol Evol 8 (1): 271–81. doi:10.1093/gbe/evv243. PMC: 4758240. PMID 26659921.
  175. ↑ Yi-Jyun Luo, Takeshi Takeuchi, Ryo Koyanagi, Lixy Yamada, Miyuki Kanda, Mariia Khalturina, Manabu Fujie, Shin-Ichi Yamasaki, Kazuyoshi Endo & Noriyuki Satoh (2015). "The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization". Nature communications 6: 8301. doi:10.1038/ncomms9301. PMID 26383154.
  176. ↑ Jean-Francois Flot, Boris Hespeels, Xiang Li, Benjamin Noel, Irina Arkhipova, Etienne G. J. Danchin, Andreas Hejnol, Bernard Henrissat, Romain Koszul, Jean-Marc Aury, Valerie Barbe, Roxane-Marie Barthelemy, Jens Bast, Georgii A. Bazykin, Olivier Chabrol, Arnaud Couloux, Martine Da Rocha, Corinne Da Silva, Eugene Gladyshev, Philippe Gouret, Oskar Hallatschek, Bette Hecox-Lea, Karine Labadie, Benjamin Lejeune, Oliver Piskurek, Julie Poulain, Fernando Rodriguez, Joseph F. Ryan, Olga A. Vakhrusheva, Eric Wajnberg, Benedicte Wirth, Irina Yushenova, Manolis Kellis, Alexey S. Kondrashov, David B. Mark Welch, Pierre Pontarotti, Jean Weissenbach, Patrick Wincker, Olivier Jaillon & Karine Van Doninck (August 2013). "Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga". Nature 500 (7463): 453–457. doi:10.1038/nature12326. PMID 23873043.
This article is issued from Wikipedia - version of the Thursday, April 21, 2016. The text is available under the Creative Commons Attribution/Share Alike but additional terms may apply for the media files.