GLIS1

GLIS family zinc finger 1
Identifiers
Symbol	GLIS1
External IDs	OMIM: 610378 HomoloGene: 77390 GeneCards: GLIS1 Gene
Gene ontology Molecular function • RNA polymerase II regulatory region sequence-specific DNA binding • transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding • transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding • metal ion binding Cellular component • nucleus Biological process • negative regulation of transcription from RNA polymerase II promoter • transcription from RNA polymerase II promoter • positive regulation of transcription from RNA polymerase II promoter Sources: Amigo / QuickGO
Orthologs
Species	Human	Mouse
Entrez	148979	230587
Ensembl	ENSG00000174332	ENSMUSG00000034762
UniProt	Q8NBF1	Q8K1M4
RefSeq (mRNA)	NM_147193	NM_147221
RefSeq (protein)	NP_671726	NP_671754
Location (UCSC)	Chr 1: 53.51 – 53.74 Mb	Chr 4: 107.43 – 107.64 Mb
PubMed search

Glis1 (Glis Family Zinc Finger 1) is gene encoding a Krüppel-like protein of the same name whose locus is found on Chromosome 1p32.3.^[1][2] The gene is enriched in unfertilised eggs and embryos at the one cell stage^[3] and it can be used to promote direct reprogramming of somatic cells to induced pluripotent stem cells, also known as iPS cells.^[3] Glis1 is a highly promiscuous transcription factor, regulating the expression of numerous genes, either positively or negatively. In organisms, Glis1 does not appear to have any directly important functions. Mice whose Glis1 gene has been removed have no noticeable change to their phenotype.^[4]

Structure

The zinc finger domain of Gli1 in complex with DNA. The third, fourth and fifth zinc fingers of Gli1 are over 80% homologous to the zinc finger domain in Glis1, with fingers four and five making the most intimate interactions with DNA.^[2][5]

Glis1 is an 84.3 kDa proline rich protein composed of 789 amino acids.^[2] No crystal structure has yet been determined for Glis1, however it is homologous to other proteins in many parts of its amino acid sequence whose structures have been solved.

Zinc finger domain

Glis1 uses a Zinc finger domain comprising five tandem Cys₂His₂ zinc finger motifs (meaning the zinc atom is coordinated by two cysteine and two histidine residues) to interact with target DNA sequences to regulate gene transcription. The domain interacts sequence specifically with the DNA, following the major groove along the double helix. It has the consensus sequence GACCACCCAC.^[2] The individual zinc finger motifs are separated from one another by the amino acid sequence(T/S)GEKP(Y/F)X,^[2] where X can be any amino acid and (A/B) can be either A or B. This domain is homologous to the zinc finger domain found in Gli1 and so is thought to interact with DNA in the same way.^[2] The alpha helices of the fourth and fifth zinc fingers are inserted in to the major groove and make the most extensive contact of all the zinc fingers with the DNA.^[5][6] Very few contact are made by the second and third fingers and the first finger does not contact the DNA at all.^[6] The first finger does make numerous protein-protein interactions with the second zinc finger, however.^[5][6]

Termini

Glis1 has an activation domain at its C-terminus and a repressive domain at its N-terminus. The repressive domain is much stronger than the activation domain meaning transcription is weak. The activation domain of Glis1 is four times stronger in the presence of CaM kinase IV. This may be due to a coactivator. A proline-rich region of the protein is also found towards the N-terminal. The protein's termini are fairly unusual, and have no strong sequence similarity other proteins.^[2]

Use in cell reprogramming

Glis1 can be used as one of the four factors used in reprogramming somatic cells to induced pluripotent stem cells.^[3] The three transcription factors Oct3/4, Sox2 and Klf4 are essential for reprogramming but are extremely inefficient on their own, fully reprogramming roughly only 0.005% of the number of cells treated with the factors.^[7] When Glis1 is introduced with these three factors, the efficiency of reprogramming is massively increased, producing many more fully reprogrammed cells. The transcription factor c-Myc can also be used as the fourth factor and was the original fourth factor used by Shinya Yamanaka who received the 2012 Nobel Prize in Physiology or Medicine for his work in the conversion of somatic cells to iPS cells.^[8][9][10] Yamanaka's work allows a way of bypassing the controversy surrounding stem cells.^[10]

Mechanism

Somatic cells are most often fully differentiated in order to perform a specific function, and therefore only express the genes required to perform their function. This means the genes that are required for differentiation to other types of cell are packaged within chromatin structures, so that they are not expressed.^[11]

Glis1 reprograms cells by promoting multiple pro-reprogramming pathways.^[3] These pathways are activated due to the up regulation of the transcription factors N-Myc, Mycl1, c-Myc, Nanog, ESRRB, FOXA2, GATA4, NKX2-5, as well as the other three factors used for reprogramming.^[3] Glis1 also up-regulates expression of the protein LIN28 which binds the let-7 microRNA precursor, preventing production of active let-7. Let-7 microRNAs reduce the expression of pro-reprogramming genes via RNA interference.^[12][13] Glis1 is also able to directly associate with the other three reprogramming factors which may help their function.^[3]

The result of the various changes in gene expression is the conversion of heterochromatin, which is very difficult to access, to euchromatin, which can be easily accessed by transcriptional proteins and enzymes such as RNA polymerase.^[14] During reprogramming, histones, which make up nucleosomes, the complexes used to package DNA, are generally demethylated and acetylated 'unpacking' the DNA by neutralising the positive charge of the lysine residues on the N-termini of histones.^[14]

Advantages over c-myc

Glis1 has a number of extremely important advantages over c-myc in cell reprogramming.

• No risk of cancer: Although c-myc enhances the efficiency of reprogramming, its major disadvantage is that it is a proto-oncogene meaning the iPS cells produced using c-myc are much more likely to become cancerous. This is an enormous obstacle between iPS cells and their use in medicine.^[15] When Glis1 is used in cell reprogramming, there is no increased risk of cancer development.^[3]
• Production of fewer 'bad' colonies: While c-myc promotes the proliferation of reprogrammed cells, it also promotes the proliferation of 'bad' cells which have not reprogrammed properly and make up the vast majority of cells in a dish of treated cells. Glis1 actively suppresses the proliferation of cells that have not fully reprogrammed, making the selection and harvesting of the properly reprogrammed cells less laborious.^[3][15] This is likely to be due to many of these 'bad' cells expressing Glis1 but not all four of the reprogramming factors. When expressed on its own, Glis1 inhibits proliferation.^[3]
• More efficient reprogramming: The use of Glis1 reportedly produces more fully reprogrammed iPS cells than c-myc. This is an important quality given the inefficiency of reprogramming.^[3]

Disadvantages

• Inhibition of Proliferation: Failure to stop Glis1 expression after reprogramming inhibits cell proliferation and ultimately leads to the death of the reprogrammed cell. Therefore careful regulation of Glis1 expression is required.^[16] This explains why Glis1 expression is switched off in embryos after they have started to divide.^[3][16]

Roles in disease

Glis1 has been implicated to play a part in a number of diseases and disorders.

Psoriasis

Glis1 has been shown to be heavily up regulated in psoriasis,^[17] a disease which causes chronic inflammation of the skin. Normally, Glis1 is not expressed in the skin at all. However during inflammation, it is expressed in the spinous layer of the skin, the second layer from the bottom of four layers as a response to the inflammation. This is the last layer where the cells have nuclei and thus the last layer where gene expression occurs. It is believed that the role of Glis1 in this disease is to promote cell differentiation in the skin by changing the increasing the expression of multiple pro-differentation genes such as IGFBP2 which inhibits proliferation and can also promote apoptosis^[18] It also decreases the expression of Jagged1, a ligand of notch in the notch signaling pathway^[19] and Frizzled10, a receptor in the wnt signaling pathway.^[20]

Late onset Parkinson's Disease

A certain allele of Glis1 which exists due to a single nucleotide polymorphism, a change in a single nucleotide of the DNA sequence of the gene, has been implicated as a risk factor in the neurodegenerative disorder Parkinson's disease. The allele is linked to the late onset variety of Parkinson's, which is acquired in old age. The reason behind this link is not yet known.^[21]

References

1. "Entrez Gene: GLIS family zinc finger 1".
2. Kim YS, Lewandoski M, Perantoni AO, Kurebayashi S, Nakanishi G, Jetten AM (August 2002). "Identification of Glis1, a novel Gli-related, Kruppel-like zinc finger protein containing transactivation and repressor functions". J. Biol. Chem. 277 (34): 30901–13. doi:10.1074/jbc.M203563200. PMID 12042312.
3. Maekawa M, Yamaguchi K, Nakamura T, Shibukawa R, Kodanaka I, Ichisaka T, Kawamura Y, Mochizuki H, Goshima N, Yamanaka S (June 2011). "Direct reprogramming of somatic cells is promoted by maternal transcription factor Glis1". Nature 474 (7350): 225–9. doi:10.1038/nature10106. PMID 21654807. Lay summary – AsianScientist.
4. Kang HS, ZeRuth G, Lichti-Kaiser K, Vasanth S, Yin Z, Kim YS, Jetten AM (November 2010). "Gli-similar (Glis) Krüppel-like zinc finger proteins: insights into their physiological functions and critical roles in neonatal diabetes and cystic renal disease". Histol. Histopathol. 25 (11): 1481–96. PMC 2996882. PMID 20865670.
5. Pavletich NP, Pabo CO (September 1993). "Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers". Science 261 (5129): 1701–7. Bibcode:1993Sci...261.1701P. doi:10.1126/science.8378770. PMID 8378770.
6. Klug A, Schwabe JW (May 1995). "Protein motifs 5. Zinc fingers". FASEB J. 9 (8): 597–604. PMID 7768350.
7. Nakagawa M, Koyanagi M, Tanabe K, Takahashi K, Ichisaka T, Aoi T, Okita K, Mochiduki Y, Takizawa N, Yamanaka S (January 2008). "Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts". Nat. Biotechnol. 26 (1): 101–6. doi:10.1038/nbt1374. PMID 18059259.
8. Takahashi K, Yamanaka S (August 2006). "Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors". Cell 126 (4): 663–76. doi:10.1016/j.cell.2006.07.024. PMID 16904174.
9. Takahashi K, Tanabe K, Ohnuki M, Narita M, Ichisaka T, Tomoda K, Yamanaka S (November 2007). "Induction of pluripotent stem cells from adult human fibroblasts by defined factors". Cell 131 (5): 861–72. doi:10.1016/j.cell.2007.11.019. PMID 18035408.
10. "The Nobel Prize in Physiology or Medicine – 2012 Press Release". Nobel Media AB. 8 October 2012.
11. Ralston A, Shaw K (2008). "Gene Expression Regulates Cell Differentiation". Nature Education 1 (1).
12. Boyerinas B, Park SM, Hau A, Murmann AE, Peter ME (March 2010). "The role of let-7 in cell differentiation and cancer". Endocr. Relat. Cancer 17 (1): F19–36. doi:10.1677/ERC-09-0184. PMID 19779035.
13. Ali PS, Ghoshdastider U, Hoffmann J, Brutschy B, Filipek S (2012). "Recognition of the let-7g miRNA precursor by human Lin28B". FEBS Letters 586 (22): 3986–90. doi:10.1016/j.febslet.2012.09.034. PMID 23063642.
14. Luger K, Dechassa ML, Tremethick DJ (July 2012). "New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?". Nat. Rev. Mol. Cell Biol. 13 (7): 436–47. doi:10.1038/nrm3382. PMC 3408961. PMID 22722606.
15. Okita K, Ichisaka T, Yamanaka S (July 2007). "Generation of germline-competent induced pluripotent stem cells". Nature 448 (7151): 313–7. Bibcode:2007Natur.448..313O. doi:10.1038/nature05934. PMID 17554338.
16. Mochiduki Y, Okita K (June 2012). "Methods for iPS cell generation for basic research and clinical applications". Biotechnol J 7 (6): 789–97. doi:10.1002/biot.201100356. PMID 22378737.
17. Nakanishi G, Kim YS, Nakajima T, Jetten AM (January 2006). "Regulatory role for Krüppel-like zinc-finger protein Gli-similar 1 (Glis1) in PMA-treated and psoriatic epidermis". J. Invest. Dermatol. 126 (1): 49–60. doi:10.1038/sj.jid.5700018. PMC 1435652. PMID 16417217.
18. Wolf E, Lahm H, Wu M, Wanke R, Hoeflich A (July 2000). "Effects of IGFBP-2 overexpression in vitro and in vivo". Pediatr. Nephrol. 14 (7): 572–8. doi:10.1007/s004670000362. PMID 10912521.
19. Nickoloff BJ, Qin JZ, Chaturvedi V, Denning MF, Bonish B, Miele L (August 2002). "Jagged-1 mediated activation of notch signaling induces complete maturation of human keratinocytes through NF-kappaB and PPARgamma". Cell Death Differ. 9 (8): 842–55. doi:10.1038/sj.cdd.4401036. PMID 12107827.
20. Janda CY, Waghray D, Levin AM, Thomas C, Garcia KC (July 2012). "Structural basis of Wnt recognition by Frizzled". Science 337 (6090): 59–64. Bibcode:2012Sci...337...59J. doi:10.1126/science.1222879. PMC 3577348. PMID 22653731.
21. Song W, Chen YP, Huang R, Chen K, Pan PL, Li J, Yang Y, Shang HF (2012). "GLIS1 rs797906: an increased risk factor for late-onset Parkinson's disease in the Han Chinese population". Eur. Neurol. 68 (2): 89–92. doi:10.1159/000337955. PMID 22759478.